Literature DB >> 29483249

Effects of maturation on the conformational free-energy landscape of SOD1.

Robert M Culik1,2,3, Ashok Sekhar4,2,3, Jayashree Nagesh5, Harmeen Deol6, Jessica A O Rumfeldt6, Elizabeth M Meiering6, Lewis E Kay4,2,3,7.   

Abstract

Amyotrophic lateral sclerosis (ALS) is a devastating fatal syndrome characterized by very rapid degeneration of motor neurons. A leading hypothesis is that ALS is caused by toxic protein misfolding and aggregation, as also occurs in many other neurodegenerative disorders, such as prion, Alzheimer's, Parkinson's, and Huntington's diseases. A prominent cause of familial ALS is mutations in the protein superoxide dismutase (SOD1), which promote the formation of misfolded SOD1 conformers that are prone to aberrant interactions both with each other and with other cellular components. We have shown previously that immature SOD1, lacking bound Cu and Zn metal ions and the intrasubunit disulfide bond (apoSOD12SH), has a rugged free-energy surface (FES) and exchanges with four other conformations (excited states) that have millisecond lifetimes and sparse populations on the order of a few percent. Here, we examine further states of SOD1 along its maturation pathway, as well as those off-pathway resulting from metal loss that have been observed in proteinaceous inclusions. Metallation and disulfide bond formation lead to structural transformations including local ordering of the electrostatic loop and native dimerization that are observed in rare conformers of apoSOD12SH; thus, SOD1 maturation may occur via a population-switch mechanism whereby posttranslational modifications select for preexisting structures on the FES. Metallation and oxidation of SOD1 stabilize the native, mature conformation and decrease the number of detected excited conformational states, suggesting that it is the immature forms of the protein that contribute to misfolded conformations in vivo rather than the highly stable enzymatically active dimer.

Entities:  

Keywords:  CEST; CPMG; NMR; SOD1; excited conformational states

Mesh:

Substances:

Year:  2018        PMID: 29483249      PMCID: PMC5856554          DOI: 10.1073/pnas.1721022115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  58 in total

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Authors:  Dominik Barthelme; James Z Chen; Jonathan Grabenstatter; Tania A Baker; Robert T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-07       Impact factor: 11.205

2.  Probing the free energy landscapes of ALS disease mutants of SOD1 by NMR spectroscopy.

Authors:  Ashok Sekhar; Jessica A O Rumfeldt; Helen R Broom; Colleen M Doyle; Ryan E Sobering; Elizabeth M Meiering; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

Review 3.  Recent advances in research on neuropathological aspects of familial amyotrophic lateral sclerosis with superoxide dismutase 1 gene mutations: neuronal Lewy body-like hyaline inclusions and astrocytic hyaline inclusions.

Authors:  S Kato; M Saito; A Hirano; E Ohama
Journal:  Histol Histopathol       Date:  1999-07       Impact factor: 2.303

4.  Many roads lead to Rome? Multiple modes of Cu,Zn superoxide dismutase destabilization, misfolding and aggregation in amyotrophic lateral sclerosis.

Authors:  Helen R Broom; Jessica A O Rumfeldt; Elizabeth M Meiering
Journal:  Essays Biochem       Date:  2014       Impact factor: 8.000

5.  On the measurement of ¹⁵N-{¹H} nuclear Overhauser effects. 2. Effects of the saturation scheme and water signal suppression.

Authors:  Fabien Ferrage; Amy Reichel; Shibani Battacharya; David Cowburn; Ranajeet Ghose
Journal:  J Magn Reson       Date:  2010-09-24       Impact factor: 2.229

6.  Amyotrophic lateral sclerosis mutations have the greatest destabilizing effect on the apo- and reduced form of SOD1, leading to unfolding and oxidative aggregation.

Authors:  Yoshiaki Furukawa; Thomas V O'Halloran
Journal:  J Biol Chem       Date:  2005-02-03       Impact factor: 5.157

7.  The structure of holo and metal-deficient wild-type human Cu, Zn superoxide dismutase and its relevance to familial amyotrophic lateral sclerosis.

Authors:  Richard W Strange; Svetlana Antonyuk; Michael A Hough; Peter A Doucette; Jorge A Rodriguez; P John Hart; Lawrence J Hayward; Joan S Valentine; S Samar Hasnain
Journal:  J Mol Biol       Date:  2003-05-09       Impact factor: 5.469

8.  Increase of Cu,Zn-superoxide dismutase activity during differentiation of human K562 cells involves activation by copper of a constantly expressed copper-deficient protein.

Authors:  C Steinkühler; O Sapora; M T Carrì; W Nagel; L Marcocci; M R Ciriolo; U Weser; G Rotilio
Journal:  J Biol Chem       Date:  1991-12-25       Impact factor: 5.157

9.  Zinc binding modulates the entire folding free energy surface of human Cu,Zn superoxide dismutase.

Authors:  Can Kayatekin; Jill A Zitzewitz; C Robert Matthews
Journal:  J Mol Biol       Date:  2008-09-26       Impact factor: 5.469

10.  Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation.

Authors:  N A Farrow; R Muhandiram; A U Singer; S M Pascal; C M Kay; G Gish; S E Shoelson; T Pawson; J D Forman-Kay; L E Kay
Journal:  Biochemistry       Date:  1994-05-17       Impact factor: 3.162

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  15 in total

1.  Nonnative structure in a peptide model of the unfolded state of superoxide dismutase 1 (SOD1): Implications for ALS-linked aggregation.

Authors:  Noah R Cohen; Jill A Zitzewitz; Osman Bilsel; C Robert Matthews
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Review 2.  Characterizing Post-Translational Modifications and Their Effects on Protein Conformation Using NMR Spectroscopy.

Authors:  Ajith Kumar; Vaishali Narayanan; Ashok Sekhar
Journal:  Biochemistry       Date:  2019-11-04       Impact factor: 3.162

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Authors:  Emma E Cawood; Theodoros K Karamanos; Andrew J Wilson; Sheena E Radford
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4.  Molecular recognition and maturation of SOD1 by its evolutionarily destabilised cognate chaperone hCCS.

Authors:  Fernanda A Sala; Gareth S A Wright; Svetlana V Antonyuk; Richard C Garratt; S Samar Hasnain
Journal:  PLoS Biol       Date:  2019-02-08       Impact factor: 9.593

5.  Evolutionary Analyses of Sequence and Structure Space Unravel the Structural Facets of SOD1.

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Journal:  Biomolecules       Date:  2019-12-04

6.  Methylglyoxal interaction with superoxide dismutase 1.

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Journal:  Redox Biol       Date:  2020-01-07       Impact factor: 11.799

7.  Amyotrophic Lateral Sclerosis: Proteins, Proteostasis, Prions, and Promises.

Authors:  Luke McAlary; Yee Lian Chew; Jeremy Stephen Lum; Nicholas John Geraghty; Justin John Yerbury; Neil R Cashman
Journal:  Front Cell Neurosci       Date:  2020-11-04       Impact factor: 5.505

8.  Friction-Limited Folding of Disulfide-Reduced Monomeric SOD1.

Authors:  Noah R Cohen; Can Kayatekin; Jill A Zitzewitz; Osman Bilsel; C R Matthews
Journal:  Biophys J       Date:  2020-03-12       Impact factor: 4.033

9.  Free energy calculations of ALS-causing SOD1 mutants reveal common perturbations to stability and dynamics along the maturation pathway.

Authors:  Nicholas G M Wells; Grant A Tillinghast; Alison L O'Neil; Colin A Smith
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10.  Removal of slow-pulsing artifacts in in-phase 15N relaxation dispersion experiments using broadband 1H decoupling.

Authors:  Soumya Deep Chatterjee; Marcellus Ubbink; Hugo van Ingen
Journal:  J Biomol NMR       Date:  2018-06-02       Impact factor: 2.835

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