Literature DB >> 29478914

Genome-wide CRISPR-Cas9 Screen Identifies Leukemia-Specific Dependence on a Pre-mRNA Metabolic Pathway Regulated by DCPS.

Takuji Yamauchi1, Takeshi Masuda2, Matthew C Canver3, Michael Seiler4, Yuichiro Semba5, Mohammad Shboul6, Mohammed Al-Raqad7, Manami Maeda8, Vivien A C Schoonenberg3, Mitchel A Cole3, Claudio Macias-Trevino3, Yuichi Ishikawa8, Qiuming Yao9, Michitaka Nakano5, Fumio Arai10, Stuart H Orkin3, Bruno Reversade6, Silvia Buonamici4, Luca Pinello9, Koichi Akashi11, Daniel E Bauer3, Takahiro Maeda12.   

Abstract

To identify novel targets for acute myeloid leukemia (AML) therapy, we performed genome-wide CRISPR-Cas9 screening using AML cell lines, followed by a second screen in vivo. Here, we show that the mRNA decapping enzyme scavenger (DCPS) gene is essential for AML cell survival. The DCPS enzyme interacted with components of pre-mRNA metabolic pathways, including spliceosomes, as revealed by mass spectrometry. RG3039, a DCPS inhibitor originally developed to treat spinal muscular atrophy, exhibited anti-leukemic activity via inducing pre-mRNA mis-splicing. Humans harboring germline biallelic DCPS loss-of-function mutations do not exhibit aberrant hematologic phenotypes, indicating that DCPS is dispensable for human hematopoiesis. Our findings shed light on a pre-mRNA metabolic pathway and identify DCPS as a target for AML therapy.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR-Cas9 saturation mutagenesis; acute myeloid leukemia; decapping enzyme; drug repurposing; genome-wide CRISPR-Cas9 screening; mRNA decay; pre-mRNA metabolism; pre-mRNA splicing

Mesh:

Substances:

Year:  2018        PMID: 29478914      PMCID: PMC5849534          DOI: 10.1016/j.ccell.2018.01.012

Source DB:  PubMed          Journal:  Cancer Cell        ISSN: 1535-6108            Impact factor:   31.743


  70 in total

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Journal:  Proteins       Date:  2005-09-01

2.  Induction of an interferon response by RNAi vectors in mammalian cells.

Authors:  Alan J Bridge; Stephanie Pebernard; Annick Ducraux; Anne-Laure Nicoulaz; Richard Iggo
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

3.  Near-optimal probabilistic RNA-seq quantification.

Authors:  Nicolas L Bray; Harold Pimentel; Páll Melsted; Lior Pachter
Journal:  Nat Biotechnol       Date:  2016-04-04       Impact factor: 54.908

4.  Cellular thermal shift and clickable chemical probe assays for the determination of drug-target engagement in live cells.

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Journal:  Org Biomol Chem       Date:  2016-05-24       Impact factor: 3.876

5.  Polymorphic Sirpa is the genetic determinant for NOD-based mouse lines to achieve efficient human cell engraftment.

Authors:  Takuji Yamauchi; Katsuto Takenaka; Shingo Urata; Takahiro Shima; Yoshikane Kikushige; Takahito Tokuyama; Chika Iwamoto; Mariko Nishihara; Hiromi Iwasaki; Toshihiro Miyamoto; Nakayuki Honma; Miki Nakao; Takashi Matozaki; Koichi Akashi
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Review 6.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

7.  Physiologic Expression of Sf3b1(K700E) Causes Impaired Erythropoiesis, Aberrant Splicing, and Sensitivity to Therapeutic Spliceosome Modulation.

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Journal:  Cancer Cell       Date:  2016-09-12       Impact factor: 31.743

8.  Cancer-Associated SF3B1 Hotspot Mutations Induce Cryptic 3' Splice Site Selection through Use of a Different Branch Point.

Authors:  Rachel B Darman; Michael Seiler; Anant A Agrawal; Kian H Lim; Shouyong Peng; Daniel Aird; Suzanna L Bailey; Erica B Bhavsar; Betty Chan; Simona Colla; Laura Corson; Jacob Feala; Peter Fekkes; Kana Ichikawa; Gregg F Keaney; Linda Lee; Pavan Kumar; Kaiko Kunii; Crystal MacKenzie; Mark Matijevic; Yoshiharu Mizui; Khin Myint; Eun Sun Park; Xiaoling Puyang; Anand Selvaraj; Michael P Thomas; Jennifer Tsai; John Y Wang; Markus Warmuth; Hui Yang; Ping Zhu; Guillermo Garcia-Manero; Richard R Furman; Lihua Yu; Peter G Smith; Silvia Buonamici
Journal:  Cell Rep       Date:  2015-10-22       Impact factor: 9.423

9.  MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens.

Authors:  Wei Li; Han Xu; Tengfei Xiao; Le Cong; Michael I Love; Feng Zhang; Rafael A Irizarry; Jun S Liu; Myles Brown; X Shirley Liu
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  35 in total

Review 1.  Altered RNA Processing in Cancer Pathogenesis and Therapy.

Authors:  Esther A Obeng; Connor Stewart; Omar Abdel-Wahab
Journal:  Cancer Discov       Date:  2019-10-14       Impact factor: 39.397

2.  Identification of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia.

Authors:  Heiko Becker; Gabriele Greve; Keisuke Kataoka; Jan-Philipp Mallm; Jesús Duque-Afonso; Tobias Ma; Christoph Niemöller; Milena Pantic; Justus Duyster; Michael L Cleary; Julia Schüler; Karsten Rippe; Seishi Ogawa; Michael Lübbert
Journal:  Blood Adv       Date:  2019-03-12

3.  DrugThatGene: integrative analysis to streamline the identification of druggable genes, pathways and protein complexes from CRISPR screens.

Authors:  Matthew C Canver; Daniel E Bauer; Takahiro Maeda; Luca Pinello
Journal:  Bioinformatics       Date:  2019-06-01       Impact factor: 6.937

4.  [Development and applications of CRISPR/Cas9 library screening technology in cancer research].

Authors:  Ting Lei; Bin Xiao; Yongyin He; Jing Qu; Zhaohui Sun; Linhai Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2019-11-30

5.  Aberrant RNA Splicing in Cancer.

Authors:  Luisa Escobar-Hoyos; Katherine Knorr; Omar Abdel-Wahab
Journal:  Annu Rev Cancer Biol       Date:  2018-11-28

6.  The Endoplasmic Reticulum Cargo Receptor SURF4 Facilitates Efficient Erythropoietin Secretion.

Authors:  Zesen Lin; Richard King; Vi Tang; Greggory Myers; Ginette Balbin-Cuesta; Ann Friedman; Beth McGee; Karl Desch; Ayse Bilge Ozel; David Siemieniak; Pavan Reddy; Brian Emmer; Rami Khoriaty
Journal:  Mol Cell Biol       Date:  2020-11-06       Impact factor: 4.272

Review 7.  mRNA cap regulation in mammalian cell function and fate.

Authors:  Alison Galloway; Victoria H Cowling
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-10-09       Impact factor: 4.490

8.  Surface antigen-guided CRISPR screens identify regulators of myeloid leukemia differentiation.

Authors:  Eric Wang; Hua Zhou; Bettina Nadorp; Geraldine Cayanan; Xufeng Chen; Anna H Yeaton; Sofia Nomikou; Matthew T Witkowski; Sonali Narang; Andreas Kloetgen; Palaniraja Thandapani; Niklas Ravn-Boess; Aristotelis Tsirigos; Iannis Aifantis
Journal:  Cell Stem Cell       Date:  2021-01-14       Impact factor: 24.633

9.  Targeting leukemia-specific dependence on the de novo purine synthesis pathway.

Authors:  Takuji Yamauchi; Kohta Miyawaki; Yuichiro Semba; Masatomo Takahashi; Yoshihiro Izumi; Jumpei Nogami; Fumihiko Nakao; Takeshi Sugio; Kensuke Sasaki; Luca Pinello; Daniel E Bauer; Takeshi Bamba; Koichi Akashi; Takahiro Maeda
Journal:  Leukemia       Date:  2021-08-03       Impact factor: 11.528

10.  An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia.

Authors:  Michael Hamilton; Yutaka Shima; Jeevisha Bajaj; Kendall Chambers; Kyle Spinler; Eric L Van Nostrand; Brian A Yee; Steven M Blue; Michael Chen; David Rizzeri; Charles Chuah; Vivian G Oehler; H Elizabeth Broome; Roman Sasik; James Scott-Browne; Anjana Rao; Gene W Yeo; Tannishtha Reya
Journal:  Nat Cancer       Date:  2020-04-20
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