Literature DB >> 32864546

Aberrant RNA Splicing in Cancer.

Luisa Escobar-Hoyos1,2,3, Katherine Knorr4, Omar Abdel-Wahab1,4,5.   

Abstract

RNA splicing, the enzymatic process of removing segments of premature RNA to produce mature RNA, is a key mediator of proteome diversity and regulator of gene expression. Increased systematic sequencing of the genome and transcriptome of cancers has identified a variety of means by which RNA splicing is altered in cancer relative to normal cells. These findings, in combination with the discovery of recurrent change-of-function mutations in splicing factors in a variety of cancers, suggest that alterations in splicing are drivers of tumorigenesis. Greater characterization of altered splicing in cancer parallels increasing efforts to pharmacologically perturb splicing and early-phase clinical development of small molecules that disrupt splicing in patients with cancer. Here we review recent studies of global changes in splicing in cancer, splicing regulation of mitogenic pathways critical in cancer transformation, and efforts to therapeutically target splicing in cancer.

Entities:  

Keywords:  RNA; SF3B1; SRSF2; U2AF1; ZRSR2; splicing

Year:  2018        PMID: 32864546      PMCID: PMC7453310          DOI: 10.1146/annurev-cancerbio-030617-050407

Source DB:  PubMed          Journal:  Annu Rev Cancer Biol        ISSN: 2472-3428


  109 in total

Review 1.  Pre-mRNA splicing: awash in a sea of proteins.

Authors:  Melissa S Jurica; Melissa J Moore
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

2.  Identical splicing of aberrant epidermal growth factor receptor transcripts from amplified rearranged genes in human glioblastomas.

Authors:  N Sugawa; A J Ekstrand; C D James; V P Collins
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

3.  Significance of Polypyrimidine Tract-Binding Protein 1 Expression in Colorectal Cancer.

Authors:  Hidekazu Takahashi; Junichi Nishimura; Yoshinori Kagawa; Yoshihiro Kano; Yusuke Takahashi; Xin Wu; Masayuki Hiraki; Atsushi Hamabe; Masamitsu Konno; Naotsugu Haraguchi; Ichiro Takemasa; Tsunekazu Mizushima; Masaru Ishii; Koshi Mimori; Hideshi Ishii; Yuichiro Doki; Masaki Mori; Hirofumi Yamamoto
Journal:  Mol Cancer Ther       Date:  2015-04-22       Impact factor: 6.261

4.  SnapShot: Spliceosome Dynamics II.

Authors:  Markus C Wahl; Reinhard Lührmann
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

Review 5.  Context-dependent control of alternative splicing by RNA-binding proteins.

Authors:  Xiang-Dong Fu; Manuel Ares
Journal:  Nat Rev Genet       Date:  2014-08-12       Impact factor: 53.242

6.  Oncogenic splicing factor SRSF1 is a critical transcriptional target of MYC.

Authors:  Shipra Das; Olga Anczuków; Martin Akerman; Adrian R Krainer
Journal:  Cell Rep       Date:  2012-02-23       Impact factor: 9.423

7.  Copy-number and gene dependency analysis reveals partial copy loss of wild-type SF3B1 as a novel cancer vulnerability.

Authors:  Brenton R Paolella; William J Gibson; Laura M Urbanski; John A Alberta; Travis I Zack; Pratiti Bandopadhayay; Caitlin A Nichols; Pankaj K Agarwalla; Meredith S Brown; Rebecca Lamothe; Yong Yu; Peter S Choi; Esther A Obeng; Dirk Heckl; Guo Wei; Belinda Wang; Aviad Tsherniak; Francisca Vazquez; Barbara A Weir; David E Root; Glenn S Cowley; Sara J Buhrlage; Charles D Stiles; Benjamin L Ebert; William C Hahn; Robin Reed; Rameen Beroukhim
Journal:  Elife       Date:  2017-02-08       Impact factor: 8.140

8.  The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.

Authors:  Liang Chen; Jia-Yu Chen; Yi-Jou Huang; Ying Gu; Jinsong Qiu; Hao Qian; Changwei Shao; Xuan Zhang; Jing Hu; Hairi Li; Shunmin He; Yu Zhou; Omar Abdel-Wahab; Dong-Er Zhang; Xiang-Dong Fu
Journal:  Mol Cell       Date:  2018-01-27       Impact factor: 17.970

9.  Physiologic Expression of Sf3b1(K700E) Causes Impaired Erythropoiesis, Aberrant Splicing, and Sensitivity to Therapeutic Spliceosome Modulation.

Authors:  Esther A Obeng; Ryan J Chappell; Michael Seiler; Michelle C Chen; Dean R Campagna; Paul J Schmidt; Rebekka K Schneider; Allegra M Lord; Lili Wang; Rutendo G Gambe; Marie E McConkey; Abdullah M Ali; Azra Raza; Lihua Yu; Silvia Buonamici; Peter G Smith; Ann Mullally; Catherine J Wu; Mark D Fleming; Benjamin L Ebert
Journal:  Cancer Cell       Date:  2016-09-12       Impact factor: 31.743

10.  A mutant epidermal growth factor receptor common in human glioma confers enhanced tumorigenicity.

Authors:  R Nishikawa; X D Ji; R C Harmon; C S Lazar; G N Gill; W K Cavenee; H J Huang
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-02       Impact factor: 11.205

View more
  24 in total

1.  Altered RNA Splicing by Mutant p53 Activates Oncogenic RAS Signaling in Pancreatic Cancer.

Authors:  Luisa F Escobar-Hoyos; Alex Penson; Ram Kannan; Hana Cho; Chun-Hao Pan; Rohit K Singh; Lisa H Apken; G Aaron Hobbs; Renhe Luo; Nicolas Lecomte; Sruthi Babu; Fong Cheng Pan; Direna Alonso-Curbelo; John P Morris; Gokce Askan; Olivera Grbovic-Huezo; Paul Ogrodowski; Jonathan Bermeo; Joseph Saglimbeni; Cristian D Cruz; Yu-Jui Ho; Sharon A Lawrence; Jerry P Melchor; Grant A Goda; Karen Bai; Alessandro Pastore; Simon J Hogg; Srivatsan Raghavan; Peter Bailey; David K Chang; Andrew Biankin; Kenneth R Shroyer; Brian M Wolpin; Andrew J Aguirre; Andrea Ventura; Barry Taylor; Channing J Der; Daniel Dominguez; Daniel Kümmel; Andrea Oeckinghaus; Scott W Lowe; Robert K Bradley; Omar Abdel-Wahab; Steven D Leach
Journal:  Cancer Cell       Date:  2020-06-18       Impact factor: 31.743

Review 2.  Alternative splicing modulates cancer aggressiveness: role in EMT/metastasis and chemoresistance.

Authors:  Debanwita Roy Burman; Shalini Das; Rahul Bhattacharya; Chandrima Das
Journal:  Mol Biol Rep       Date:  2021-01-05       Impact factor: 2.316

3.  The Long Noncoding RNA NEAT1 Promotes Sarcoma Metastasis by Regulating RNA Splicing Pathways.

Authors:  Jianguo Huang; Mohit Sachdeva; Eric Xu; Timothy J Robinson; Lixia Luo; Yan Ma; Nerissa T Williams; Omar Lopez; Lisa D Cervia; Fan Yuan; Xiaodi Qin; Dadong Zhang; Kouros Owzar; Nalan Gokgoz; Andrew Seto; Tomoyo Okada; Samuel Singer; Irene L Andrulis; Jay S Wunder; Alexander J Lazar; Brian P Rubin; Krista Pipho; Stephano S Mello; Jimena Giudice; David G Kirsch
Journal:  Mol Cancer Res       Date:  2020-06-19       Impact factor: 5.852

4.  DNMT3A Harboring Leukemia-Associated Mutations Directs Sensitivity to DNA Damage at Replication Forks.

Authors:  Kartika Venugopal; Yang Feng; Pawel Nowialis; Huanzhou Xu; Daniil E Shabashvili; Cassandra M Berntsen; Prabhjot Kaur; Kathryn I Krajcik; Christina Taragjini; Zachary Zaroogian; Heidi L Casellas Román; Luisa M Posada; Chamara Gunaratne; Jianping Li; Daphné Dupéré-Richer; Richard L Bennett; Santhi Pondugula; Alberto Riva; Christopher R Cogle; Rene Opavsky; Brian K Law; Sumita Bhaduri-McIntosh; Stefan Kubicek; Philipp B Staber; Jonathan D Licht; Jonathan E Bird; Olga A Guryanova
Journal:  Clin Cancer Res       Date:  2022-02-15       Impact factor: 12.531

5.  Intronic Cis-Element DR8 in hTERT Is Bound by Splicing Factor SF3B4 and Regulates hTERT Splicing in Non-Small Cell Lung Cancer.

Authors:  Aaron L Slusher; Jeongjin J Kim; Mark Ribick; Jesse Pollens-Voigt; Armand Bankhead; Phillip L Palmbos; Andrew T Ludlow
Journal:  Mol Cancer Res       Date:  2022-10-04       Impact factor: 6.333

6.  Alternative Splicing in Human Biology and Disease.

Authors:  Daniel Jutzi; Marc-David Ruepp
Journal:  Methods Mol Biol       Date:  2022

7.  Deciphering associations between three RNA splicing-related genetic variants and lung cancer risk.

Authors:  Wenjun Yang; Hongliang Liu; Ruoxin Zhang; Jennifer A Freedman; Younghun Han; Rayjean J Hung; Yonathan Brhane; John McLaughlin; Paul Brennan; Heike Bickeboeller; Albert Rosenberger; Richard S Houlston; Neil E Caporaso; Maria Teresa Landi; Irene Brueske; Angela Risch; David C Christiani; Christopher I Amos; Xiaoxin Chen; Steven R Patierno; Qingyi Wei
Journal:  NPJ Precis Oncol       Date:  2022-06-30

Review 8.  Understanding aberrant RNA splicing to facilitate cancer diagnosis and therapy.

Authors:  Xuesen Dong; Ruiqi Chen
Journal:  Oncogene       Date:  2019-12-09       Impact factor: 9.867

Review 9.  Targeting the transcription cycle and RNA processing in cancer treatment.

Authors:  Lin Zhang; Youyou Zhang; Xiaowen Hu
Journal:  Curr Opin Pharmacol       Date:  2021-05-05       Impact factor: 4.768

10.  Splicing Factor Mutations and Disease Phenotype: Searching for a Needle in a Haystack.

Authors:  Kevin Rouault-Pierre
Journal:  Hemasphere       Date:  2021-06-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.