Literature DB >> 24380600

Crowding, diffusion, and biochemical reactions.

Matthias Weiss1.   

Abstract

Diffusion is the basic mode of transport for molecules in living cells. Diffusion leads to dispersion of individual molecules, but it is also the driving force behind biochemical reactions and pattern formation as diffusional motion mediates reactant encounters. Owing to macromolecular crowding in all cellular fluids and biomembranes, diffusion of molecules in cells is quite different from the motion observed in dilute solutions in a test tube. Hindered and anomalous diffusion are seen in cells, and biochemical reactions are affected by these. This review is intended to give an introduction and a brief overview about causes and consequences of crowding-induced diffusion anomalies and their impact on biochemical reactions.
© 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Anomalous diffusion; Diffusion; Diffusion-limited reactions; Fluorescence correlation spectroscopy; Fluorescence recovery; Fractal kinetics; Macromolecular crowding; Photobleaching; Subdiffusion

Mesh:

Year:  2014        PMID: 24380600     DOI: 10.1016/B978-0-12-800046-5.00011-4

Source DB:  PubMed          Journal:  Int Rev Cell Mol Biol        ISSN: 1937-6448            Impact factor:   6.813


  18 in total

1.  Dynamic assembly of the exomer secretory vesicle cargo adaptor subunits.

Authors:  Martina Huranova; Gopinath Muruganandam; Matthias Weiss; Anne Spang
Journal:  EMBO Rep       Date:  2016-01-07       Impact factor: 8.807

2.  An equilibrium model for the combined effect of macromolecular crowding and surface adsorption on the formation of linear protein fibrils.

Authors:  Travis Hoppe; Allen P Minton
Journal:  Biophys J       Date:  2015-02-17       Impact factor: 4.033

3.  Diffusion of Exit Sites on the Endoplasmic Reticulum: A Random Walk on a Shivering Backbone.

Authors:  Lorenz Stadler; Konstantin Speckner; Matthias Weiss
Journal:  Biophys J       Date:  2018-09-15       Impact factor: 4.033

Review 4.  Mitochondrial Morphofunction in Mammalian Cells.

Authors:  Elianne P Bulthuis; Merel J W Adjobo-Hermans; Peter H G M Willems; Werner J H Koopman
Journal:  Antioxid Redox Signal       Date:  2018-11-29       Impact factor: 8.401

Review 5.  Out of the Randomness: Correlating Noise in Biological Systems.

Authors:  Maddalena Collini; Margaux Bouzin; Giuseppe Chirico
Journal:  Biophys J       Date:  2018-02-21       Impact factor: 4.033

6.  Increased Confinement and Polydispersity of STIM1 and Orai1 after Ca2+ Store Depletion.

Authors:  Xianan Qin; Lei Liu; Sang Kwon Lee; Adolfo Alsina; Teng Liu; Chao Wu; Hojeong Park; Chenglong Yu; Hajin Kim; Jun Chu; Antoine Triller; Ben Zhong Tang; Changbong Hyeon; Chan Young Park; Hyokeun Park
Journal:  Biophys J       Date:  2019-11-22       Impact factor: 4.033

7.  Size-Dependent Interplay of Volume Exclusion Versus Soft Interactions: Cytochrome c in Macromolecular Crowded Environment.

Authors:  Zahoor Ahmad Parray; Faizan Ahmad; Anis Ahmad Chaudhary; Hassan Ahmad Rudayni; Mohammed Al-Zharani; Md Imtaiyaz Hassan; Asimul Islam
Journal:  Front Mol Biosci       Date:  2022-05-25

8.  Subtle changes in crosslinking drive diverse anomalous transport characteristics in actin-microtubule networks.

Authors:  S J Anderson; J Garamella; S Adalbert; R J McGorty; R M Robertson-Anderson
Journal:  Soft Matter       Date:  2021-04-28       Impact factor: 3.679

9.  Interactions of macromolecular crowding agents and cosolutes with small-molecule substrates: effect on horseradish peroxidase activity with two different substrates.

Authors:  William M Aumiller; Bradley W Davis; Emmanuel Hatzakis; Christine D Keating
Journal:  J Phys Chem B       Date:  2014-08-26       Impact factor: 2.991

10.  Fibrillar fibronectin plays a key role as nucleator of collagen I polymerization during macromolecular crowding-enhanced matrix assembly.

Authors:  Jenna Graham; Michael Raghunath; Viola Vogel
Journal:  Biomater Sci       Date:  2019-08-22       Impact factor: 6.843

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