Literature DB >> 29455382

QSPR modeling of optical rotation of amino acids using specific quantum chemical descriptors.

Karina Kapusta1,2, Natalia Sizochenko3, Sedat Karabulut3, Sergiy Okovytyy3,4, Eugene Voronkov4, Jerzy Leszczynski5.   

Abstract

Many chemical phenomena occur in solution. Different solvents can change the optical activity of chiral molecules. The optical rotation angles of solutes of 75 amino acids in dimethylformamide, water and methanol were analyzed using the quantitative structure-activity relationships approach. For an accurate description of chirality, we used specific quantum chemical descriptors, which reflect the properties of a chiral center, and continuous symmetry measures. The set of specific quantum chemical descriptors for atoms located near the chiral center, such as Mulliken charges, the sum of Mulliken charges on an atom (with the hydrogen charges summed up with the adjacent non-hydrogen atoms), and nuclear magnetic resoncance tensors was applied. To represent solvent effects, we used mixture-like structural simplex descriptors and quantum chemical descriptors obtained for structures optimized for specified solvent using PBE1PBE/6-31G** level of theory with the polarizable continuum model. Multiple linear regression, M5P, and locally weighted learning techniques were used to achieve accurate predictions. The specific quantum chemical descriptors proposed here demonstrated high specificity in the majority of the developed models and established direct quantitative structure-property relationships.

Entities:  

Keywords:  Amino acid; Chirality; Molecular descriptors; NMR tensors; Optical rotation; QSPR; Quantum chemical descriptors

Mesh:

Substances:

Year:  2018        PMID: 29455382     DOI: 10.1007/s00894-018-3593-z

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  20 in total

1.  Quantum-Chemical Descriptors in QSAR/QSPR Studies.

Authors:  Mati Karelson; Victor S. Lobanov; Alan R. Katritzky
Journal:  Chem Rev       Date:  1996-05-09       Impact factor: 60.622

Review 2.  L-nucleoside enantiomers as antivirals drugs: a mini-review.

Authors:  Christophe Mathé; Gilles Gosselin
Journal:  Antiviral Res       Date:  2006-05-23       Impact factor: 5.970

3.  New descriptors of amino acids and their application to peptide QSAR study.

Authors:  Zhi-hua Lin; Hai-xia Long; Zhu Bo; Yuan-qiang Wang; Yu-zhang Wu
Journal:  Peptides       Date:  2008-06-18       Impact factor: 3.750

4.  QSAR modeling: where have you been? Where are you going to?

Authors:  Artem Cherkasov; Eugene N Muratov; Denis Fourches; Alexandre Varnek; Igor I Baskin; Mark Cronin; John Dearden; Paola Gramatica; Yvonne C Martin; Roberto Todeschini; Viviana Consonni; Victor E Kuz'min; Richard Cramer; Romualdo Benigni; Chihae Yang; James Rathman; Lothar Terfloth; Johann Gasteiger; Ann Richard; Alexander Tropsha
Journal:  J Med Chem       Date:  2014-01-06       Impact factor: 7.446

5.  Prediction of properties of chiral compounds by molecular topology.

Authors:  J V de Julián-Ortiz; C de Gregorio Alapont; I Ríos-Santamarina; R García-Doménech; J Gálvez
Journal:  J Mol Graph Model       Date:  1998-02       Impact factor: 2.518

Review 6.  Use of 13C NMR chemical shift as QSAR/QSPR descriptor.

Authors:  Rajeshwar P Verma; Corwin Hansch
Journal:  Chem Rev       Date:  2011-03-25       Impact factor: 60.622

Review 7.  Existing and Developing Approaches for QSAR Analysis of Mixtures.

Authors:  Eugene N Muratov; Ekaterina V Varlamova; Anatoly G Artemenko; Pavel G Polishchuk; Victor E Kuz'min
Journal:  Mol Inform       Date:  2012-03-13       Impact factor: 3.353

8.  A Historical Excursus on the Statistical Validation Parameters for QSAR Models: A Clarification Concerning Metrics and Terminology.

Authors:  Paola Gramatica; Alessandro Sangion
Journal:  J Chem Inf Model       Date:  2016-06-03       Impact factor: 4.956

Review 9.  The enantioselectivity of enzymes involved in current antiviral therapy using nucleoside analogues: a new strategy?

Authors:  G Maury
Journal:  Antivir Chem Chemother       Date:  2000-05

10.  Was photoresolution of amino acids the origin of optical activity in life?

Authors:  B Norden
Journal:  Nature       Date:  1977-04-07       Impact factor: 49.962

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.