Literature DB >> 27078388

Equilibrium self-assembly of small RNA viruses.

R F Bruinsma1,2, M Comas-Garcia3, R F Garmann4, A Y Grosberg5.   

Abstract

We propose a description for the quasiequilibrium self-assembly of small, single-stranded (ss) RNA viruses whose capsid proteins (CPs) have flexible, positively charged, disordered tails that associate with the negatively charged RNA genome molecules. We describe the assembly of such viruses as the interplay between two coupled phase-transition-like events: the formation of the protein shell (the capsid) by CPs and the condensation of a large ss viral RNA molecule. Electrostatic repulsion between the CPs competes with attractive hydrophobic interactions and attractive interaction between neutralized RNA segments mediated by the tail groups. An assembly diagram is derived in terms of the strength of attractive interactions between CPs and between CPs and the RNA molecules. It is compared with the results of recent studies of viral assembly. We demonstrate that the conventional theory of self-assembly, which does describe the assembly of empty capsids, is in general not applicable to the self-assembly of RNA-encapsidating virions.

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Year:  2016        PMID: 27078388     DOI: 10.1103/PhysRevE.93.032405

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  14 in total

1.  Electrostatics-Driven Inflation of Elastic Icosahedral Shells as a Model for Swelling of Viruses.

Authors:  Anže Lošdorfer Božič; Antonio Šiber
Journal:  Biophys J       Date:  2018-08-07       Impact factor: 4.033

2.  Confining annealed branched polymers inside spherical capsids.

Authors:  Alexander Y Grosberg; Robijn Bruinsma
Journal:  J Biol Phys       Date:  2018-02-14       Impact factor: 1.365

3.  Relationships between RNA topology and nucleocapsid structure in a model icosahedral virus.

Authors:  Laurent Marichal; Laetitia Gargowitsch; Rafael Leite Rubim; Christina Sizun; Kalouna Kra; Stéphane Bressanelli; Yinan Dong; Sanaz Panahandeh; Roya Zandi; Guillaume Tresset
Journal:  Biophys J       Date:  2021-08-19       Impact factor: 3.699

4.  Assembly and Stability of Simian Virus 40 Polymorphs.

Authors:  Curt Waltmann; Roi Asor; Uri Raviv; Monica Olvera de la Cruz
Journal:  ACS Nano       Date:  2020-04-02       Impact factor: 15.881

5.  The different faces of mass action in virus assembly.

Authors:  Bart van der Holst; Willem K Kegel; Roya Zandi; Paul van der Schoot
Journal:  J Biol Phys       Date:  2018-04-03       Impact factor: 1.365

Review 6.  Packaging of Genomic RNA in Positive-Sense Single-Stranded RNA Viruses: A Complex Story.

Authors:  Mauricio Comas-Garcia
Journal:  Viruses       Date:  2019-03-13       Impact factor: 5.048

7.  Investigating the thermal dissociation of viral capsid by lattice model.

Authors:  Jingzhi Chen; Maelenn Chevreuil; Sophie Combet; Yves Lansac; Guillaume Tresset
Journal:  J Phys Condens Matter       Date:  2017-11-29       Impact factor: 2.333

Review 8.  Physical virology: From virus self-assembly to particle mechanics.

Authors:  Pedro Buzón; Sourav Maity; Wouter H Roos
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-01-20

9.  Systematic analysis of biological roles of charged amino acid residues located throughout the structured inner wall of a virus capsid.

Authors:  Pablo J P Carrillo; Marta Hervás; Alicia Rodríguez-Huete; Rebeca Pérez; Mauricio G Mateu
Journal:  Sci Rep       Date:  2018-06-22       Impact factor: 4.379

10.  Nonequilibrium self-assembly dynamics of icosahedral viral capsids packaging genome or polyelectrolyte.

Authors:  Maelenn Chevreuil; Didier Law-Hine; Jingzhi Chen; Stéphane Bressanelli; Sophie Combet; Doru Constantin; Jéril Degrouard; Johannes Möller; Mehdi Zeghal; Guillaume Tresset
Journal:  Nat Commun       Date:  2018-08-06       Impact factor: 14.919

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