Literature DB >> 29440400

Rewiring Yarrowia lipolytica toward triacetic acid lactone for materials generation.

Kelly A Markham1, Claire M Palmer2, Malgorzata Chwatko1, James M Wagner1, Clare Murray1, Sofia Vazquez1, Arvind Swaminathan1, Ishani Chakravarty1, Nathaniel A Lynd1, Hal S Alper3,2.   

Abstract

Polyketides represent an extremely diverse class of secondary metabolites often explored for their bioactive traits. These molecules are also attractive building blocks for chemical catalysis and polymerization. However, the use of polyketides in larger scale chemistry applications is stymied by limited titers and yields from both microbial and chemical production. Here, we demonstrate that an oleaginous organism (specifically, Yarrowia lipolytica) can overcome such production limitations owing to a natural propensity for high flux through acetyl-CoA. By exploring three distinct metabolic engineering strategies for acetyl-CoA precursor formation, we demonstrate that a previously uncharacterized pyruvate bypass pathway supports increased production of the polyketide triacetic acid lactone (TAL). Ultimately, we establish a strain capable of producing over 35% of the theoretical conversion yield to TAL in an unoptimized tube culture. This strain also obtained an averaged maximum titer of 35.9 ± 3.9 g/L with an achieved maximum specific productivity of 0.21 ± 0.03 g/L/h in bioreactor fermentation. Additionally, we illustrate that a β-oxidation-related overexpression (PEX10) can support high TAL production and is capable of achieving over 43% of the theoretical conversion yield under nitrogen starvation in a test tube. Next, through use of this bioproduct, we demonstrate the utility of polyketides like TAL to modify commodity materials such as poly(epichlorohydrin), resulting in an increased molecular weight and shift in glass transition temperature. Collectively, these findings establish an engineering strategy enabling unprecedented production from a type III polyketide synthase as well as establish a route through O-functionalization for converting polyketides into new materials.

Entities:  

Keywords:  O-functionalization; Yarrowia lipolytica; biorenewable chemicals; polyketide synthase; triacetic acid lactone

Mesh:

Substances:

Year:  2018        PMID: 29440400      PMCID: PMC5834725          DOI: 10.1073/pnas.1721203115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Overexpression of alpha-ketoglutarate dehydrogenase in Yarrowia lipolytica and its effect on production of organic acids.

Authors:  Martina Holz; Christina Otto; Anne Kretzschmar; Venelina Yovkova; Andreas Aurich; Markus Pötter; Achim Marx; Gerold Barth
Journal:  Appl Microbiol Biotechnol       Date:  2010-10-30       Impact factor: 4.813

2.  Triacetic acid lactone production in industrial Saccharomyces yeast strains.

Authors:  Lauren P Saunders; Michael J Bowman; Jeffrey A Mertens; Nancy A Da Silva; Ronald E Hector
Journal:  J Ind Microbiol Biotechnol       Date:  2015-02-15       Impact factor: 3.346

Review 3.  Frontiers of yeast metabolic engineering: diversifying beyond ethanol and Saccharomyces.

Authors:  Leqian Liu; Heidi Redden; Hal S Alper
Journal:  Curr Opin Biotechnol       Date:  2013-03-28       Impact factor: 9.740

4.  Metabolic engineering of Saccharomyces cerevisiae for the production of triacetic acid lactone.

Authors:  Javier Cardenas; Nancy A Da Silva
Journal:  Metab Eng       Date:  2014-07-30       Impact factor: 9.783

5.  Application of centrifugal force to the extraction and separation of parasorboside and gerberin from Gerbera hybrida.

Authors:  Teijo Yrjönen; Pia Vuorela; Karel D Klika; Kalevi Pihlaja; Teemu H Teeri; Heikki Vuorela
Journal:  Phytochem Anal       Date:  2002 Nov-Dec       Impact factor: 3.373

6.  Characterization of mutants of the yeast Yarrowia lipolytica defective in acetyl-coenzyme A synthetase.

Authors:  M Kujau; H Weber; G Barth
Journal:  Yeast       Date:  1992-03       Impact factor: 3.239

Review 7.  Stereocontrol within polyketide assembly lines.

Authors:  Adrian T Keatinge-Clay
Journal:  Nat Prod Rep       Date:  2016-02       Impact factor: 13.423

8.  Characterization of the Far Transcription Factor Family in Aspergillus flavus.

Authors:  Xingyu Luo; Katharyn J Affeldt; Nancy P Keller
Journal:  G3 (Bethesda)       Date:  2016-10-13       Impact factor: 3.154

9.  4-Hydroxy-6-alkyl-2-pyrones as nucleophilic coupling partners in Mitsunobu reactions and oxa-Michael additions.

Authors:  Michael J Burns; Thomas O Ronson; Richard J K Taylor; Ian J S Fairlamb
Journal:  Beilstein J Org Chem       Date:  2014-05-20       Impact factor: 2.883

Review 10.  Exploiting the Biosynthetic Potential of Type III Polyketide Synthases.

Authors:  Yan Ping Lim; Maybelle K Go; Wen Shan Yew
Journal:  Molecules       Date:  2016-06-22       Impact factor: 4.411

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  30 in total

1.  Improving ionic liquid tolerance in Saccharomyces cerevisiae through heterologous expression and directed evolution of an ILT1 homolog from Yarrowia lipolytica.

Authors:  Kevin B Reed; James M Wagner; Simon d'Oelsnitz; Joshua M Wiggers; Hal S Alper
Journal:  J Ind Microbiol Biotechnol       Date:  2019-08-19       Impact factor: 3.346

2.  Guide RNA Design for Genome-Wide CRISPR Screens in Yarrowia lipolytica.

Authors:  Adithya Ramesh; Ian Wheeldon
Journal:  Methods Mol Biol       Date:  2021

Review 3.  Engineering Yarrowia lipolytica for Use in Biotechnological Applications: A Review of Major Achievements and Recent Innovations.

Authors:  Catherine Madzak
Journal:  Mol Biotechnol       Date:  2018-08       Impact factor: 2.695

Review 4.  Synthetic biology, systems biology, and metabolic engineering of Yarrowia lipolytica toward a sustainable biorefinery platform.

Authors:  Jingbo Ma; Yang Gu; Monireh Marsafari; Peng Xu
Journal:  J Ind Microbiol Biotechnol       Date:  2020-07-04       Impact factor: 3.346

5.  Engineering Yarrowia lipolytica for the production of cyclopropanated fatty acids.

Authors:  Kelly A Markham; Hal S Alper
Journal:  J Ind Microbiol Biotechnol       Date:  2018-08-17       Impact factor: 3.346

6.  Methods to Activate and Elucidate Complex Endogenous Sugar Metabolism in Yarrowia lipolytica.

Authors:  Seunghyun Ryu; Cong T Trinh
Journal:  Methods Mol Biol       Date:  2021

Review 7.  Biosynthesis of terpene compounds using the non-model yeast Yarrowia lipolytica: grand challenges and a few perspectives.

Authors:  Alyssa M Worland; Jeffrey J Czajka; Yanran Li; Yechun Wang; Yinjie J Tang; Wei Wen Su
Journal:  Curr Opin Biotechnol       Date:  2020-04-13       Impact factor: 9.740

8.  Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis.

Authors:  James Yu; Jenny Landberg; Farbod Shavarebi; Virginia Bilanchone; Adam Okerlund; Umayangani Wanninayake; Le Zhao; George Kraus; Suzanne Sandmeyer
Journal:  Biotechnol Bioeng       Date:  2018-06-06       Impact factor: 4.530

9.  Engineering Escherichia coli to increase triacetic acid lactone (TAL) production using an optimized TAL sensor-reporter system.

Authors:  Ye Li; Shuai Qian; Rachel Dunn; Patrick C Cirino
Journal:  J Ind Microbiol Biotechnol       Date:  2018-07-25       Impact factor: 3.346

Review 10.  Genome editing systems across yeast species.

Authors:  Zhiliang Yang; Mark Blenner
Journal:  Curr Opin Biotechnol       Date:  2020-10-01       Impact factor: 9.740

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