Literature DB >> 33011454

Genome editing systems across yeast species.

Zhiliang Yang1, Mark Blenner2.   

Abstract

Yeasts are used to produce a myriad of value-added compounds. Engineering yeasts into cost-efficient cell factories is greatly facilitated by the availability of genome editing tools. While traditional engineering techniques such as homologous recombination-based gene knockout and pathway integration continue to be widely used, novel genome editing systems including multiplexed approaches, bacteriophage integrases, CRISPR-Cas systems, and base editors are emerging as more powerful toolsets to accomplish rapid genome scale engineering and phenotype screening. In this review, we summarized the techniques which have been successfully implemented in model yeast Saccharomyces cerevisiae as well as non-conventional yeast species. The mechanisms and applications of various genome engineering systems are discussed and general guidelines to expand genome editing systems from S. cerevisiae to other yeast species are also highlighted.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2020        PMID: 33011454      PMCID: PMC7744358          DOI: 10.1016/j.copbio.2020.08.011

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  106 in total

1.  High efficiency CRISPR/Cas9 genome editing system with an eliminable episomal sgRNA plasmid in Pichia pastoris.

Authors:  Yankun Yang; Guoqiang Liu; Xiao Chen; Meng Liu; Chunjun Zhan; Xiuxia Liu; Zhonghu Bai
Journal:  Enzyme Microb Technol       Date:  2020-04-01       Impact factor: 3.493

Review 2.  Engineering strategies for enhanced production of protein and bio-products in Pichia pastoris: A review.

Authors:  Zhiliang Yang; Zisheng Zhang
Journal:  Biotechnol Adv       Date:  2017-11-10       Impact factor: 14.227

3.  Metabolic and genomic characterisation of stress-tolerant industrial Saccharomyces cerevisiae strains from TALENs-assisted multiplex editing.

Authors:  Yuman Gan; Yuping Lin; Yufeng Guo; Xianni Qi; Qinhong Wang
Journal:  FEMS Yeast Res       Date:  2018-08-01       Impact factor: 2.796

4.  Engineering Yarrowia lipolytica as a platform for synthesis of drop-in transportation fuels and oleochemicals.

Authors:  Peng Xu; Kangjian Qiao; Woo Suk Ahn; Gregory Stephanopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-12       Impact factor: 11.205

5.  Improved gene disruption method and Cre-loxP mutant system for multiple gene disruptions in Hansenula polymorpha.

Authors:  Weidong Qian; Haolei Song; Yueyong Liu; Chaozheng Zhang; Zhendong Niu; Hui Wang; Bingsheng Qiu
Journal:  J Microbiol Methods       Date:  2009-09-16       Impact factor: 2.363

6.  Homology-integrated CRISPR-Cas (HI-CRISPR) system for one-step multigene disruption in Saccharomyces cerevisiae.

Authors:  Zehua Bao; Han Xiao; Jing Liang; Lu Zhang; Xiong Xiong; Ning Sun; Tong Si; Huimin Zhao
Journal:  ACS Synth Biol       Date:  2014-09-19       Impact factor: 5.110

7.  Application of the Cre-loxP system for multiple gene disruption in the yeast Kluyveromyces marxianus.

Authors:  Orquídea Ribeiro; Andreas K Gombert; José A Teixeira; Lucília Domingues
Journal:  J Biotechnol       Date:  2007-06-06       Impact factor: 3.307

8.  A CRISPR-Cas9 system for multiple genome editing and pathway assembly in Candida tropicalis.

Authors:  Lihua Zhang; Haibing Zhang; Yufei Liu; Jingyu Zhou; Wei Shen; Liming Liu; Qi Li; Xianzhong Chen
Journal:  Biotechnol Bioeng       Date:  2019-11-28       Impact factor: 4.530

9.  Deletion of the Pichia pastoris KU70 homologue facilitates platform strain generation for gene expression and synthetic biology.

Authors:  Laura Näätsaari; Beate Mistlberger; Claudia Ruth; Tanja Hajek; Franz S Hartner; Anton Glieder
Journal:  PLoS One       Date:  2012-06-29       Impact factor: 3.240

10.  Engineering the oleaginous yeast Yarrowia lipolytica for production of α-farnesene.

Authors:  Yinghang Liu; Xin Jiang; Zhiyong Cui; Zhaoxuan Wang; Qingsheng Qi; Jin Hou
Journal:  Biotechnol Biofuels       Date:  2019-12-23       Impact factor: 6.040

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  6 in total

Review 1.  Tips, Tricks, and Potential Pitfalls of CRISPR Genome Editing in Saccharomyces cerevisiae.

Authors:  Jacob S Antony; John M Hinz; John J Wyrick
Journal:  Front Bioeng Biotechnol       Date:  2022-05-30

2.  Evaluation of Ogataea (Hansenula) polymorpha for Hyaluronic Acid Production.

Authors:  João Heitor Colombelli Manfrão-Netto; Enzo Bento Queiroz; Kelly Assis Rodrigues; Cintia M Coelho; Hugo Costa Paes; Elibio Leopoldo Rech; Nádia Skorupa Parachin
Journal:  Microorganisms       Date:  2021-02-03

Review 3.  Virus-Like Particle Mediated CRISPR/Cas9 Delivery for Efficient and Safe Genome Editing.

Authors:  Pin Lyu; Luxi Wang; Baisong Lu
Journal:  Life (Basel)       Date:  2020-12-21

4.  Adaptive laboratory evolution in S. cerevisiae highlights role of transcription factors in fungal xenobiotic resistance.

Authors:  Sabine Ottilie; Madeline R Luth; Erich Hellemann; Gregory M Goldgof; Eddy Vigil; Prianka Kumar; Andrea L Cheung; Miranda Song; Karla P Godinez-Macias; Krypton Carolino; Jennifer Yang; Gisel Lopez; Matthew Abraham; Maureen Tarsio; Emmanuelle LeBlanc; Luke Whitesell; Jake Schenken; Felicia Gunawan; Reysha Patel; Joshua Smith; Melissa S Love; Roy M Williams; Case W McNamara; William H Gerwick; Trey Ideker; Yo Suzuki; Dyann F Wirth; Amanda K Lukens; Patricia M Kane; Leah E Cowen; Jacob D Durrant; Elizabeth A Winzeler
Journal:  Commun Biol       Date:  2022-02-11

5.  Editorial: Genomic strategies for efficient microbial cell factories.

Authors:  Eugene Fletcher; Yun Chen; Luis Caspeta; Amir Feizi
Journal:  Front Bioeng Biotechnol       Date:  2022-08-05

6.  Identification of a novel gene required for competitive growth at high temperature in the thermotolerant yeast Kluyveromyces marxianus.

Authors:  Noemi Montini; Tyler W Doughty; Iván Domenzain; Darren A Fenton; Pavel V Baranov; Ronan Harrington; Jens Nielsen; Verena Siewers; John P Morrissey
Journal:  Microbiology (Reading)       Date:  2022-03       Impact factor: 2.956

  6 in total

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