Literature DB >> 29439135

Mapping human development at single-cell resolution.

Sam Behjati1,2, Susan Lindsay3, Sarah A Teichmann1,4, Muzlifah Haniffa5,6.   

Abstract

Human development is regulated by spatiotemporally restricted molecular programmes and is pertinent to many areas of basic biology and human medicine, such as stem cell biology, reproductive medicine and childhood cancer. Mapping human development has presented significant technological, logistical and ethical challenges. The availability of established human developmental biorepositories and the advent of cutting-edge single-cell technologies provide new opportunities to study human development. Here, we present a working framework for the establishment of a human developmental cell atlas exploiting single-cell genomics and spatial analysis. We discuss how the development atlas will benefit the scientific and clinical communities to advance our understanding of basic biology, health and disease.
© 2018. Published by The Company of Biologists Ltd.

Entities:  

Mesh：

Year:  2018        PMID： 29439135     DOI： 10.1242/dev.152561

Source DB:  PubMed          Journal:  Development        ISSN： 0950-1991            Impact factor:   6.868


  15 in total

Review 1.  The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Authors:  Deanne M Taylor; Bruce J Aronow; Kai Tan; Kathrin Bernt; Nathan Salomonis; Casey S Greene; Alina Frolova; Sarah E Henrickson; Andrew Wells; Liming Pei; Jyoti K Jaiswal; Jeffrey Whitsett; Kathryn E Hamilton; Sonya A MacParland; Judith Kelsen; Robert O Heuckeroth; S Steven Potter; Laura A Vella; Natalie A Terry; Louis R Ghanem; Benjamin C Kennedy; Ingo Helbig; Kathleen E Sullivan; Leslie Castelo-Soccio; Arnold Kreigstein; Florian Herse; Martijn C Nawijn; Gerard H Koppelman; Melissa Haendel; Nomi L Harris; Jo Lynne Rokita; Yuanchao Zhang; Aviv Regev; Orit Rozenblatt-Rosen; Jennifer E Rood; Timothy L Tickle; Roser Vento-Tormo; Saif Alimohamed; Monkol Lek; Jessica C Mar; Kathleen M Loomes; David M Barrett; Prech Uapinyoying; Alan H Beggs; Pankaj B Agrawal; Yi-Wen Chen; Amanda B Muir; Lana X Garmire; Scott B Snapper; Javad Nazarian; Steven H Seeholzer; Hossein Fazelinia; Larry N Singh; Robert B Faryabi; Pichai Raman; Noor Dawany; Hongbo Michael Xie; Batsal Devkota; Sharon J Diskin; Stewart A Anderson; Eric F Rappaport; William Peranteau; Kathryn A Wikenheiser-Brokamp; Sarah Teichmann; Douglas Wallace; Tao Peng; Yang-Yang Ding; Man S Kim; Yi Xing; Sek Won Kong; Carsten G Bönnemann; Kenneth D Mandl; Peter S White
Journal:  Dev Cell       Date:  2019-03-28       Impact factor: 12.270

Review 2.  A periodic table of cell types.

Authors:  Bo Xia; Itai Yanai
Journal:  Development       Date:  2019-06-27       Impact factor: 6.868

3.  A human cell atlas of fetal gene expression.

Authors:  Junyue Cao; Diana R O'Day; Hannah A Pliner; Paul D Kingsley; Mei Deng; Riza M Daza; Michael A Zager; Kimberly A Aldinger; Ronnie Blecher-Gonen; Fan Zhang; Malte Spielmann; James Palis; Dan Doherty; Frank J Steemers; Ian A Glass; Cole Trapnell; Jay Shendure
Journal:  Science       Date:  2020-11-13       Impact factor: 47.728

4.  A human cell atlas of fetal chromatin accessibility.

Authors:  Silvia Domcke; Andrew J Hill; Riza M Daza; Junyue Cao; Diana R O'Day; Hannah A Pliner; Kimberly A Aldinger; Dmitry Pokholok; Fan Zhang; Jennifer H Milbank; Michael A Zager; Ian A Glass; Frank J Steemers; Dan Doherty; Cole Trapnell; Darren A Cusanovich; Jay Shendure
Journal:  Science       Date:  2020-11-13       Impact factor: 47.728

5.  A roadmap for the Human Developmental Cell Atlas.

Authors:  Muzlifah Haniffa; Deanne Taylor; Sten Linnarsson; Bruce J Aronow; Gary D Bader; Roger A Barker; Pablo G Camara; J Gray Camp; Alain Chédotal; Andrew Copp; Heather C Etchevers; Paolo Giacobini; Berthold Göttgens; Guoji Guo; Ania Hupalowska; Kylie R James; Emily Kirby; Arnold Kriegstein; Joakim Lundeberg; John C Marioni; Kerstin B Meyer; Kathy K Niakan; Mats Nilsson; Bayanne Olabi; Dana Pe'er; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Rahul Satija; Sarah A Teichmann; Barbara Treutlein; Roser Vento-Tormo; Simone Webb
Journal:  Nature       Date:  2021-09-08       Impact factor: 69.504

Review 6.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

Review 7.  Single-cell profiling for advancing birth defects research and prevention.

Authors:  Thomas B Knudsen; Malte Spielmann; Sean G Megason; Elaine M Faustman
Journal:  Birth Defects Res       Date:  2021-01-25       Impact factor: 2.661

Review 8.  Advances of single-cell genomics and epigenomics in human disease: where are we now?

Authors:  Rizqah Kamies; Celia P Martinez-Jimenez
Journal:  Mamm Genome       Date:  2020-04-08       Impact factor: 2.957

9.  Integrative Single-Cell Transcriptomic Analysis of Human Fetal Thymocyte Development.

Authors:  Yuchen Li; Weihong Zeng; Tong Li; Yanyan Guo; Guangyong Zheng; Xiaoying He; Lilian Bai; Guolian Ding; Li Jin; Xinmei Liu
Journal:  Front Genet       Date:  2021-07-02       Impact factor: 4.599

10.  Single cell derived mRNA signals across human kidney tumors.

Authors:  Matthew D Young; Thomas J Mitchell; Lars Custers; Thanasis Margaritis; Francisco Morales-Rodriguez; Kwasi Kwakwa; Eleonora Khabirova; Gerda Kildisiute; Thomas R W Oliver; Ronald R de Krijger; Marry M van den Heuvel-Eibrink; Federico Comitani; Alice Piapi; Eva Bugallo-Blanco; Christine Thevanesan; Christina Burke; Elena Prigmore; Kirsty Ambridge; Kenny Roberts; Felipe A Vieira Braga; Tim H H Coorens; Ignacio Del Valle; Anna Wilbrey-Clark; Lira Mamanova; Grant D Stewart; Vincent J Gnanapragasam; Dyanne Rampling; Neil Sebire; Nicholas Coleman; Liz Hook; Anne Warren; Muzlifah Haniffa; Marcel Kool; Stefan M Pfister; John C Achermann; Xiaoling He; Roger A Barker; Adam Shlien; Omer A Bayraktar; Sarah A Teichmann; Frank C Holstege; Kerstin B Meyer; Jarno Drost; Karin Straathof; Sam Behjati
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919
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