| Literature DB >> 29423569 |
Frances L Lynch1, Patricia Himes2, Marian J Gilmore2, Elissa M Morris2, Jennifer L Schneider3, Tia L Kauffman3, Elizabeth Shuster3, Jacob A Reiss3,2, John F Dickerson3, Michael C Leo3, James V Davis3, Carmit K McMullen3, Benjamin S Wilfond4, Katrina A B Goddard3.
Abstract
Advances in technology and the promise of personalized health care are driving greater use of genome sequencing (GS) for a variety of clinical scenarios. As health systems consider adopting GS, they need to understand the impact of GS on the organization and cost of care. While research has documented a dramatic decrease in the cost of sequencing and interpreting GS, few studies have examined how GS impacts genetic counseling workloads. This study examined the time needed to provide genetic counseling for GS in the context of preconception carrier screening. Genetic counselors prospectively reported on the time spent in the results disclosure process with 107 study participants who were part of the NextGen study. We found that the median time for results disclosure was 64 min (ranged from 5 to 229 min). Preparation work was the most time-consuming activity. Qualitative data from journal entries, debrief interviews with genetic counselors, and detailed case conference notes provided information on factors influencing time for results disclosure and implications for practice. Results suggest that expanded carrier screening could require significant increases in genetic counseling time, unless we are able to generate new resources to reduce preparation work or develop other strategies such as the creation of new models to deliver this type of service.Entities:
Keywords: Carrier testing; Genetic counseling; Mixed methods; Preconception; Time study; Whole genome sequencing
Mesh:
Year: 2018 PMID: 29423569 PMCID: PMC6061093 DOI: 10.1007/s10897-017-0205-5
Source DB: PubMed Journal: J Genet Couns ISSN: 1059-7700 Impact factor: 2.537
Fig. 1Genetic counseling time categories recorded
Descriptive statistics of sociodemographic characteristics
| Characteristic | Total | Male | Female |
|---|---|---|---|
| Mean age, years (SD) | 32.9 (4.9) | 34.1 (4.8) | 32.4 (4.8) |
| Race/ethnicity | |||
| Non-Hispanic white, | 83 | 24 | 59 |
| Non-white/multiple, | 24 | 4 | 20 |
| Education | |||
| Less than Bachelor’s degree, | 32 | 10 | 22 |
| Bachelor’s degree, | 40 | 12 | 28 |
| Graduate degree, | 34 | 5 | 29 |
| Mean number of results per person, | 1.9 (0.9) | 1.8 (0.7) | 1.9 (0.9) |
| Pregnant at result disclosure visit, | 19 | 9 | 10 |
Time for results disclosure activities for preconception genomic screening
| Time category | Median time (minutes) | Minimum-maximum |
|---|---|---|
| All study participants ( | ||
| Preparation time | 35 | (5–209) |
| Results disclosure visit | 30 | (0–67) |
| Clinical and administrative follow-up | 0 | (0–45) |
| Total time in results disclosure process | 64 | (5–229) |
| Subgroups of Study Participants | ||
| Pregnancy status | ||
| Pregnant at disclosure ( | ||
| Preparation time | 54 | (11–209) |
| Results disclosure visit | 30 | (0–47) |
| Clinical and administrative follow-up | 0 | (15–45) |
| Total time in results disclosure process | 75 | (29–229) |
| Not pregnant at disclosure ( | ||
| Preparation time | 34 | (5–119) |
| Results disclosure visit | 30 | (0–67) |
| Clinical and administrative follow-up | 0 | (0–45) |
| Total time in results disclosure process | 63 | (5–179) |
| Number of results disclosed | ||
| 1 result only ( | ||
| Preparation time | 43 | (5–87) |
| Results disclosure visit | 28 | (0–60) |
| Clinical and administrative follow-up | 0 | (0–45) |
| Total time in results disclosure process | 52 | (5–134) |
| 2 results ( | ||
| Preparation time | 45 | (12–180) |
| Results disclosure visit | 30 | (0–60) |
| Clinical and administrative follow-up | 0 | (0–45) |
| Total time in results disclosure process | 62 | (34–215) |
| 3 or more results ( | ||
| Preparation time | 62 | (22–209) |
| Results disclosure visit | 30 | (0–67) |
| Clinical and administrative follow-up | 15 | (0–35) |
| Total time in results disclosure process | 89 | (45–229) |
| Familiar vs unfamiliar result | ||
| Familiar results only ( | ||
| Preparation time | 20 | (5–70) |
| Results disclosure visit | 30 | (0–50) |
| Clinical and administrative follow-up | 0 | (0–35) |
| Total time in results disclosure process | 50 | (5–111) |
| Unfamiliar plus familiar ( | ||
| Preparation time | 55 | (23–94) |
| Results disclosure visit | 30 | (0–67) |
| Clinical and administrative follow-up | 15 | (0–35) |
| Total time in results disclosure process | 81 | (34–161) |
| Unfamiliar only ( | ||
| Preparation time | 53 | (24–209) |
| Results disclosure visit | 31 | (0–60) |
| Clinical and administrative follow-up | 0 | (0–45) |
| Total time in results disclosure process | 84 | (41–229) |
Factors influencing time for results disclosure process
| Factor | Illustrative quote |
|---|---|
| Encountering a very rare genotype | Some of these conditions are so rare, that it’s hard to find information about them. I think I spent 3 or 4 h yesterday just reviewing literature and trying to make sure I had accurate information about the natural history of the condition |
| Genetic counselor unfamiliar with finding | We both felt like “What is that gene… we did not even know what it was when we started prepping and talking about it!” When it is something we know at least a little bit about, at least we can speak about it in a way where we say “I have talked about this with people before, so I can do this.” But this was like, “Oh I really do not know what this is – I really need to learn about it before I can teach it to someone.” |
| Preparing for disclosing multiple results | I was surprised by how challenging it is to juggle 5 results that need to be returned. I anticipated that it would be and did my best to prepare, but I do not think anything can prepare you fully for something you have never done before… [genetic counselor reflection on one of the first results disclosed in the study] |
| Ambiguity in classification of gene | We have identified mutations in 3 patients who have mutations in [the same gene]. Two of them have the same mutation. In one case it was classified as likely pathogenic, in the other case it was classified as pathogenic - so a little bit of inconsistency…I emailed the lab. So either that variant is not as rare as we think it is, or maybe those people are related. |
| Changes in clinical practice over time | The other interesting thing I learned today, is SLC3A1 associated with cystinuria at the point we returned it, there was no clinical carrier testing in this country. There is now clinical carrier testing…We should be looking into updating, if we get results we have already prepped before. |
| Need for dedicated time to plan for results disclosure visit | We want to ensure [we have time] to be completely prepared for the visit. This will entail researching the gene/condition association, the range of phenotypes associated with the conditions, the availability of patient-oriented information, determining carrier frequency in the general population and the likelihood of having a child affected with the condition… If there are few reported cases in the literature, the carrier frequency may not be known. In addition, if the condition is rare, there may not be educational materials available for the family. This may present a more difficult counseling situation, and one which is very unusual for us [genetic counselors]. |