Literature DB >> 29422537

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

James C Stegen1, Tim Johnson2, James K Fredrickson2, Michael J Wilkins3,4, Allan E Konopka2, William C Nelson2, Evan V Arntzen2, William B Chrisler2, Rosalie K Chu2, Sarah J Fansler2, Emily B Graham2, David W Kennedy2, Charles T Resch2, Malak Tfaily2, John Zachara2.   

Abstract

The hyporheic corridor (HC) encompasses the river-groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate biogeochemical activity. Here we propose a novel thermodynamic mechanism underlying this phenomenon and reveal broader impacts on dissolved organic carbon (DOC) and microbial ecology. We show that thermodynamically favorable DOC accumulates in GW despite lower DOC concentration, and that RW contains thermodynamically less-favorable DOC, but at higher concentrations. This indicates that GW DOC is protected from microbial oxidation by low total energy within the DOC pool, whereas RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW-RW mixing overcomes these protections and stimulates respiration. Mixing models coupled with geophysical and molecular analyses further reveal tipping points in spatiotemporal dynamics of DOC and indicate important hydrology-biochemistry-microbial feedbacks. Previously unrecognized thermodynamic mechanisms regulated by GW-RW mixing may therefore strongly influence biogeochemical and microbial dynamics in riverine ecosystems.

Entities:  

Mesh:

Substances:

Year:  2018        PMID: 29422537      PMCID: PMC5805721          DOI: 10.1038/s41467-018-02922-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  24 in total

1.  Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment.

Authors:  Xueju Lin; David Kennedy; Aaron Peacock; James McKinley; Charles T Resch; James Fredrickson; Allan Konopka
Journal:  Appl Environ Microbiol       Date:  2011-12-02       Impact factor: 4.792

2.  Stochastic and deterministic assembly processes in subsurface microbial communities.

Authors:  James C Stegen; Xueju Lin; Allan E Konopka; James K Fredrickson
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

Review 3.  Priming effect: bridging the gap between terrestrial and aquatic ecology.

Authors:  Bertrand Guenet; Michael Danger; Luc Abbadie; Gérard Lacroix
Journal:  Ecology       Date:  2010-10       Impact factor: 5.499

4.  Automated analysis of electrospray ionization fourier transform ion cyclotron resonance mass spectra of natural organic matter.

Authors:  Elizabeth B Kujawinski; Mark D Behn
Journal:  Anal Chem       Date:  2006-07-01       Impact factor: 6.986

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.

Authors:  Viktoriya Shyp; Stoyan Tankov; Andrey Ermakov; Pavel Kudrin; Brian P English; Måns Ehrenberg; Tanel Tenson; Johan Elf; Vasili Hauryliuk
Journal:  EMBO Rep       Date:  2012-07-20       Impact factor: 8.807

7.  Ab initio prediction of metabolic networks using Fourier transform mass spectrometry data.

Authors:  Rainer Breitling; Shawn Ritchie; Dayan Goodenowe; Mhairi L Stewart; Michael P Barrett
Journal:  Metabolomics       Date:  2006-07-25       Impact factor: 4.290

8.  Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Authors:  James C Stegen; James K Fredrickson; Michael J Wilkins; Allan E Konopka; William C Nelson; Evan V Arntzen; William B Chrisler; Rosalie K Chu; Robert E Danczak; Sarah J Fansler; David W Kennedy; Charles T Resch; Malak Tfaily
Journal:  Nat Commun       Date:  2016-04-07       Impact factor: 14.919

9.  Ancient and methane-derived carbon subsidizes contemporary food webs.

Authors:  Amanda G DelVecchia; Jack A Stanford; Xiaomei Xu
Journal:  Nat Commun       Date:  2016-11-08       Impact factor: 14.919

10.  Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies.

Authors:  James C Stegen; Allan Konopka; James P McKinley; Chris Murray; Xueju Lin; Micah D Miller; David W Kennedy; Erin A Miller; Charles T Resch; Jim K Fredrickson
Journal:  Sci Rep       Date:  2016-07-29       Impact factor: 4.379

View more
  8 in total

1.  Reactivity, fate and functional roles of dissolved organic matter in anoxic inland waters.

Authors:  Maximilian P Lau; Paul Del Giorgio
Journal:  Biol Lett       Date:  2020-02-26       Impact factor: 3.703

2.  Interacting Bioenergetic and Stoichiometric Controls on Microbial Growth.

Authors:  Arjun Chakrawal; Salvatore Calabrese; Anke M Herrmann; Stefano Manzoni
Journal:  Front Microbiol       Date:  2022-05-17       Impact factor: 6.064

3.  At the Nexus of History, Ecology, and Hydrobiogeochemistry: Improved Predictions across Scales through Integration.

Authors:  James C Stegen
Journal:  mSystems       Date:  2018-04-10       Impact factor: 6.496

4.  Distinct temporal diversity profiles for nitrogen cycling genes in a hyporheic microbiome.

Authors:  William C Nelson; Emily B Graham; Alex R Crump; Sarah J Fansler; Evan V Arntzen; David W Kennedy; James C Stegen
Journal:  PLoS One       Date:  2020-01-27       Impact factor: 3.240

5.  Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers.

Authors:  Lucas Fillinger; Katrin Hug; Christian Griebler
Journal:  FEMS Microbiol Ecol       Date:  2019-11-01       Impact factor: 4.194

6.  Using metacommunity ecology to understand environmental metabolomes.

Authors:  Robert E Danczak; Rosalie K Chu; Sarah J Fansler; Amy E Goldman; Emily B Graham; Malak M Tfaily; Jason Toyoda; James C Stegen
Journal:  Nat Commun       Date:  2020-12-11       Impact factor: 14.919

7.  Inferring the Contribution of Microbial Taxa and Organic Matter Molecular Formulas to Ecological Assembly.

Authors:  Robert E Danczak; Aditi Sengupta; Sarah J Fansler; Rosalie K Chu; Vanessa A Garayburu-Caruso; Lupita Renteria; Jason Toyoda; Jacqueline Wells; James C Stegen
Journal:  Front Microbiol       Date:  2022-02-18       Impact factor: 5.640

8.  Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments.

Authors:  Josué A Rodríguez-Ramos; Mikayla A Borton; Bridget B McGivern; Garrett J Smith; Lindsey M Solden; Michael Shaffer; Rebecca A Daly; Samuel O Purvine; Carrie D Nicora; Elizabeth K Eder; Mary Lipton; David W Hoyt; James C Stegen; Kelly C Wrighton
Journal:  mSystems       Date:  2022-07-21       Impact factor: 7.324

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.