Literature DB >> 22138990

Distribution of microbial biomass and potential for anaerobic respiration in Hanford Site 300 Area subsurface sediment.

Xueju Lin1, David Kennedy, Aaron Peacock, James McKinley, Charles T Resch, James Fredrickson, Allan Konopka.   

Abstract

Subsurface sediments were recovered from a 52-m-deep borehole cored in the 300 Area of the Hanford Site in southeastern Washington State to assess the potential for biogeochemical transformation of radionuclide contaminants. Microbial analyses were made on 17 sediment samples traversing multiple geological units: the oxic coarse-grained Hanford formation (9 to 17.4 m), the oxic fine-grained upper Ringold formation (17.7 to 18.1 m), and the reduced Ringold formation (18.3 to 52 m). Microbial biomass (measured as phospholipid fatty acids) ranged from 7 to 974 pmols per g in discrete samples, with the highest numbers found in the Hanford formation. On average, strata below 17.4 m had 13-fold less biomass than those from shallower strata. The nosZ gene that encodes nitrous oxide reductase (measured by quantitative real-time PCR) had an abundance of 5 to 17 relative to that of total 16S rRNA genes below 18.3 m and <5 above 18.1 m. Most nosZ sequences were affiliated with Ochrobactrum anthropi (97 sequence similarity) or had a nearest neighbor of Achromobacter xylosoxidans (90 similarity). Passive multilevel sampling of groundwater geochemistry demonstrated a redox gradient in the 1.5-m region between the Hanford-Ringold formation contact and the Ringold oxic-anoxic interface. Within this zone, copies of the dsrA gene and Geobacteraceae had the highest relative abundance. The majority of dsrA genes detected near the interface were related to Desulfotomaculum spp. These analyses indicate that the region just below the contact between the Hanford and Ringold formations is a zone of active biogeochemical redox cycling.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22138990      PMCID: PMC3264105          DOI: 10.1128/AEM.07404-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  32 in total

Review 1.  Microbial diversity and function in soil: from genes to ecosystems.

Authors:  Vigdis Torsvik; Lise Øvreås
Journal:  Curr Opin Microbiol       Date:  2002-06       Impact factor: 7.934

2.  Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR.

Authors:  Axel Schippers; Lev N Neretin
Journal:  Environ Microbiol       Date:  2006-07       Impact factor: 5.491

3.  Microbial communities in contaminated sediments, associated with bioremediation of uranium to submicromolar levels.

Authors:  Erick Cardenas; Wei-Min Wu; Mary Beth Leigh; Jack Carley; Sue Carroll; Terry Gentry; Jian Luo; David Watson; Baohua Gu; Matthew Ginder-Vogel; Peter K Kitanidis; Philip M Jardine; Jizhong Zhou; Craig S Criddle; Terence L Marsh; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2008-05-02       Impact factor: 4.792

4.  Microbiological and geochemical heterogeneity in an in situ uranium bioremediation field site.

Authors:  Helen A Vrionis; Robert T Anderson; Irene Ortiz-Bernad; Kathleen R O'Neill; Charles T Resch; Aaron D Peacock; Richard Dayvault; David C White; Philip E Long; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

5.  Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

Authors:  S Henry; D Bru; B Stres; S Hallet; L Philippot
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

6.  Biogeochemical processes and microbial characteristics across groundwater-surface water boundaries of the Hanford Reach of the Columbia River.

Authors:  Duane P Moser; James K Fredrickson; David R Geist; Evan V Arntzen; Aaron D Peacock; Shu-Mei W Li; Tina Spadoni; James P McKinley
Journal:  Environ Sci Technol       Date:  2003-11-15       Impact factor: 9.028

7.  Microbial colonization of an in situ sediment cap and correlation to stratified redox zones.

Authors:  David W Himmelheber; Sara H Thomas; Frank E Löffler; Martial Taillefert; Joseph B Hughes
Journal:  Environ Sci Technol       Date:  2009-01-01       Impact factor: 9.028

8.  Utilization of microbial biofilms as monitors of bioremediation.

Authors:  A D Peacock; Y J Chang; J D Istok; L Krumholz; R Geyer; B Kinsall; D Watson; K L Sublette; D C White
Journal:  Microb Ecol       Date:  2004-03-04       Impact factor: 4.552

9.  Novel denitrifying bacterium Ochrobactrum anthropi YD50.2 tolerates high levels of reactive nitrogen oxides.

Authors:  Yuki Doi; Naoki Takaya; Noboru Takizawa
Journal:  Appl Environ Microbiol       Date:  2009-06-19       Impact factor: 4.792

10.  High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

Authors:  Todd Z DeSantis; Eoin L Brodie; Jordan P Moberg; Ingrid X Zubieta; Yvette M Piceno; Gary L Andersen
Journal:  Microb Ecol       Date:  2007-03-02       Impact factor: 4.192

View more
  15 in total

1.  Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.

Authors:  Xueju Lin; James McKinley; Charles T Resch; Rachael Kaluzny; Christian L Lauber; James Fredrickson; Rob Knight; Allan Konopka
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

2.  Quantifying community assembly processes and identifying features that impose them.

Authors:  James C Stegen; Xueju Lin; Jim K Fredrickson; Xingyuan Chen; David W Kennedy; Christopher J Murray; Mark L Rockhold; Allan Konopka
Journal:  ISME J       Date:  2013-06-06       Impact factor: 10.302

3.  Alpha- and Gammaproteobacterial Methanotrophs Codominate the Active Methane-Oxidizing Communities in an Acidic Boreal Peat Bog.

Authors:  Kaitlin C Esson; Xueju Lin; Deepak Kumaresan; Jeffrey P Chanton; J Colin Murrell; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2016-04-04       Impact factor: 4.792

4.  Metals other than uranium affected microbial community composition in a historical uranium-mining site.

Authors:  Jana Sitte; Sylvia Löffler; Eva-Maria Burkhardt; Katherine C Goldfarb; Georg Büchel; Terry C Hazen; Kirsten Küsel
Journal:  Environ Sci Pollut Res Int       Date:  2015-07-01       Impact factor: 4.223

5.  Application of meta-transcriptomics and -proteomics to analysis of in situ physiological state.

Authors:  Allan Konopka; Michael J Wilkins
Journal:  Front Microbiol       Date:  2012-05-18       Impact factor: 5.640

6.  Microbial mineral colonization across a subsurface redox transition zone.

Authors:  Brandon J Converse; James P McKinley; Charles T Resch; Eric E Roden
Journal:  Front Microbiol       Date:  2015-08-28       Impact factor: 5.640

7.  Estimating and mapping ecological processes influencing microbial community assembly.

Authors:  James C Stegen; Xueju Lin; Jim K Fredrickson; Allan E Konopka
Journal:  Front Microbiol       Date:  2015-05-01       Impact factor: 5.640

8.  Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments.

Authors:  Jason Benzine; Evgenya Shelobolina; Mai Yia Xiong; David W Kennedy; James P McKinley; Xueju Lin; Eric E Roden
Journal:  Front Microbiol       Date:  2013-12-16       Impact factor: 5.640

9.  Radioiodine Biogeochemistry and Prevalence in Groundwater.

Authors:  D I Kaplan; M E Denham; S Zhang; C Yeager; C Xu; K A Schwehr; H P Li; Y F Ho; D Wellman; P H Santschi
Journal:  Crit Rev Environ Sci Technol       Date:  2014-10-18       Impact factor: 12.561

10.  FunGene: the functional gene pipeline and repository.

Authors:  Jordan A Fish; Benli Chai; Qiong Wang; Yanni Sun; C Titus Brown; James M Tiedje; James R Cole
Journal:  Front Microbiol       Date:  2013-10-01       Impact factor: 5.640

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.