Literature DB >> 22814757

Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.

Viktoriya Shyp1, Stoyan Tankov, Andrey Ermakov, Pavel Kudrin, Brian P English, Måns Ehrenberg, Tanel Tenson, Johan Elf, Vasili Hauryliuk.   

Abstract

During the stringent response, Escherichia coli enzyme RelA produces the ppGpp alarmone, which in turn regulates transcription, translation and replication. We show that ppGpp dramatically increases the turnover rate of its own ribosome-dependent synthesis by RelA, resulting in direct positive regulation of an enzyme by its product. Positive allosteric regulation therefore constitutes a new mechanism of enzyme activation. By integrating the output of individual RelA molecules and ppGpp degradation pathways, this regulatory circuit contributes to a fast and coordinated transition to stringency.

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Year:  2012        PMID: 22814757      PMCID: PMC3432798          DOI: 10.1038/embor.2012.106

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  31 in total

1.  Molecular biology. Translation goes global.

Authors:  Robert B Weiss; John F Atkins
Journal:  Science       Date:  2011-12-16       Impact factor: 47.728

2.  Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations.

Authors:  H Xiao; M Kalman; K Ikehara; S Zemel; G Glaser; M Cashel
Journal:  J Biol Chem       Date:  1991-03-25       Impact factor: 5.157

3.  Characterization of the tRNA and ribosome-dependent pppGpp-synthesis by recombinant stringent factor from Escherichia coli.

Authors:  Rose-Marie Knutsson Jenvert; Lovisa Holmberg Schiavone
Journal:  FEBS J       Date:  2005-02       Impact factor: 5.542

Review 4.  (p)ppGpp: still magical?

Authors:  Katarzyna Potrykus; Michael Cashel
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

Review 5.  Non-transcriptional regulatory processes shape transcriptional network dynamics.

Authors:  J Christian J Ray; Jeffrey J Tabor; Oleg A Igoshin
Journal:  Nat Rev Microbiol       Date:  2011-10-11       Impact factor: 60.633

6.  Isolation and properties of a ribosome-bound factor required for ppGpp and ppGpp synthesis in Escherichia coli.

Authors:  J W Cochran; R W Byrne
Journal:  J Biol Chem       Date:  1974-01-25       Impact factor: 5.157

7.  Mutants of Escherichia coli defective in the degradation of guanosine 5'-triphosphate, 3'-diphosphate (pppGpp).

Authors:  C R Somerville; A Ahmed
Journal:  Mol Gen Genet       Date:  1979-02-01

8.  Characterization of nucleotide pools as a function of physiological state in Escherichia coli.

Authors:  Michael H Buckstein; Jian He; Harvey Rubin
Journal:  J Bacteriol       Date:  2007-10-26       Impact factor: 3.490

Review 9.  Bacterial nucleotide-based second messengers.

Authors:  Christina Pesavento; Regine Hengge
Journal:  Curr Opin Microbiol       Date:  2009-03-21       Impact factor: 7.934

10.  The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life.

Authors:  Gemma C Atkinson; Tanel Tenson; Vasili Hauryliuk
Journal:  PLoS One       Date:  2011-08-09       Impact factor: 3.240

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  41 in total

1.  The bacterial alarmone (p)ppGpp activates the type III secretion system in Erwinia amylovora.

Authors:  Veronica Ancona; Jae Hoon Lee; Tiyakhon Chatnaparat; Jinrok Oh; Jong-In Hong; Youfu Zhao
Journal:  J Bacteriol       Date:  2015-02-09       Impact factor: 3.490

Review 2.  Many means to a common end: the intricacies of (p)ppGpp metabolism and its control of bacterial homeostasis.

Authors:  Anthony O Gaca; Cristina Colomer-Winter; José A Lemos
Journal:  J Bacteriol       Date:  2015-01-20       Impact factor: 3.490

3.  The Rel stringent factor from Thermus thermophilus: crystallization and X-ray analysis.

Authors:  Katleen Van Nerom; Hedvig Tamman; Hiraku Takada; Vasili Hauryliuk; Abel Garcia-Pino
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-08-02       Impact factor: 1.056

4.  Genome-wide effects on Escherichia coli transcription from ppGpp binding to its two sites on RNA polymerase.

Authors:  Patricia Sanchez-Vazquez; Colin N Dewey; Nicole Kitten; Wilma Ross; Richard L Gourse
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-10       Impact factor: 11.205

Review 5.  Diversity in (p)ppGpp metabolism and effectors.

Authors:  Kuanqing Liu; Alycia N Bittner; Jue D Wang
Journal:  Curr Opin Microbiol       Date:  2015-01-28       Impact factor: 7.934

6.  The (p)ppGpp Synthetase RSH Mediates Stationary-Phase Onset and Antibiotic Stress Survival in Clostridioides difficile.

Authors:  Astha Pokhrel; Asia Poudel; Kory B Castro; Michael J Celestine; Adenrele Oludiran; Alden J Rinehold; Anthony M Resek; Mariam A Mhanna; Erin B Purcell
Journal:  J Bacteriol       Date:  2020-09-08       Impact factor: 3.490

7.  Effects of amino acid starvation on RelA diffusive behavior in live Escherichia coli.

Authors:  Wenting Li; Emmanuelle Bouveret; Yan Zhang; Kuanqing Liu; Jue D Wang; James C Weisshaar
Journal:  Mol Microbiol       Date:  2015-11-10       Impact factor: 3.501

Review 8.  Small Alarmone Synthetases as novel bacterial RNA-binding proteins.

Authors:  Vasili Hauryliuk; Gemma C Atkinson
Journal:  RNA Biol       Date:  2017-10-03       Impact factor: 4.652

9.  Structural basis for (p)ppGpp synthesis by the Staphylococcus aureus small alarmone synthetase RelP.

Authors:  Melek Cemre Manav; Jelena Beljantseva; Martin S Bojer; Tanel Tenson; Hanne Ingmer; Vasili Hauryliuk; Ditlev E Brodersen
Journal:  J Biol Chem       Date:  2018-01-11       Impact factor: 5.157

10.  Rapid Curtailing of the Stringent Response by Toxin-Antitoxin Module-Encoded mRNases.

Authors:  Chengzhe Tian; Mohammad Roghanian; Mikkel Girke Jørgensen; Kim Sneppen; Michael Askvad Sørensen; Kenn Gerdes; Namiko Mitarai
Journal:  J Bacteriol       Date:  2016-06-27       Impact factor: 3.490

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