Literature DB >> 29420866

A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range.

Nicholas T Ong1, Jeffrey J Tabor1,2.   

Abstract

Genetically engineered photoreceptors enable unrivaled control over gene expression. Previously, we ported the Synechocystis PCC 6803 CcaSR two-component system, which is activated by green light and deactivated by red, into Escherichia coli, resulting in a sensor with a sixfold dynamic range. Later, we optimized pathway protein expression levels and the output promoter sequence to decrease transcriptional leakiness and to increase the dynamic range to approximately 120-fold. These CcaSR v 1.0 and v 2.0 systems have been used for precise quantitative, temporal, and spatial control of gene expression for a variety of applications. Recently, other workers deleted two PAS domains of unknown function from the CcaS sensor histidine kinase in a system similar to CcaSR v 1.0. Here we apply these deletions to CcaSR v 2.0, resulting in a v 3.0 light sensor with an output four times less leaky and a dynamic range of nearly 600-fold. We demonstrate that the PAS domain deletions have no deleterious effect on CcaSR green light sensitivity or response dynamics. CcaSR v 3.0 is the best-performing engineered bacterial green light sensor available, and should have broad applications in fundamental and synthetic biology studies.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  gene expression; optogenetics; photoreceptors; synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29420866     DOI: 10.1002/cbic.201800007

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  19 in total

1.  Cell-machine interfaces for characterizing gene regulatory network dynamics.

Authors:  Jean-Baptiste Lugagne; Mary J Dunlop
Journal:  Curr Opin Syst Biol       Date:  2019-02-01

2.  Bacterial two-component systems as sensors for synthetic biology applications.

Authors:  John T Lazar; Jeffrey J Tabor
Journal:  Curr Opin Syst Biol       Date:  2021-10-15

Review 3.  The Red Edge: Bilin-Binding Photoreceptors as Optogenetic Tools and Fluorescence Reporters.

Authors:  Kun Tang; Hannes M Beyer; Matias D Zurbriggen; Wolfgang Gärtner
Journal:  Chem Rev       Date:  2021-10-20       Impact factor: 72.087

4.  Engineering AraC to make it responsive to light instead of arabinose.

Authors:  Edoardo Romano; Armin Baumschlager; Emir Bora Akmeriç; Navaneethan Palanisamy; Moustafa Houmani; Gregor Schmidt; Mehmet Ali Öztürk; Leonard Ernst; Mustafa Khammash; Barbara Di Ventura
Journal:  Nat Chem Biol       Date:  2021-04-26       Impact factor: 15.040

Review 5.  Steering Molecular Activity with Optogenetics: Recent Advances and Perspectives.

Authors:  Teak-Jung Oh; Huaxun Fan; Savanna S Skeeters; Kai Zhang
Journal:  Adv Biol (Weinh)       Date:  2021-01-14

6.  Phosphatase activity tunes two-component system sensor detection threshold.

Authors:  Brian P Landry; Rohan Palanki; Nikola Dyulgyarov; Lucas A Hartsough; Jeffrey J Tabor
Journal:  Nat Commun       Date:  2018-04-12       Impact factor: 14.919

Review 7.  Programming Bacteria With Light-Sensors and Applications in Synthetic Biology.

Authors:  Zedao Liu; Jizhong Zhang; Jiao Jin; Zilong Geng; Qingsheng Qi; Quanfeng Liang
Journal:  Front Microbiol       Date:  2018-11-08       Impact factor: 5.640

8.  Optogenetic control of Bacillus subtilis gene expression.

Authors:  Sebastian M Castillo-Hair; Elliot A Baerman; Masaya Fujita; Oleg A Igoshin; Jeffrey J Tabor
Journal:  Nat Commun       Date:  2019-07-15       Impact factor: 14.919

Review 9.  Emerging Species and Genome Editing Tools: Future Prospects in Cyanobacterial Synthetic Biology.

Authors:  Grant A R Gale; Alejandra A Schiavon Osorio; Lauren A Mills; Baojun Wang; David J Lea-Smith; Alistair J McCormick
Journal:  Microorganisms       Date:  2019-09-29

Review 10.  Controlling gene expression with light: a multidisciplinary endeavour.

Authors:  Denis Hartmann; Jefferson M Smith; Giacomo Mazzotti; Razia Chowdhry; Michael J Booth
Journal:  Biochem Soc Trans       Date:  2020-08-28       Impact factor: 5.407

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