Literature DB >> 34917859

Bacterial two-component systems as sensors for synthetic biology applications.

John T Lazar1, Jeffrey J Tabor2,3,4.   

Abstract

Two-component systems (TCSs) are a ubiquitous family of signal transduction pathways that enable bacteria to sense and respond to diverse physical, chemical, and biological stimuli outside and inside the cell. Synthetic biologists have begun to repurpose TCSs for applications in optogenetics, materials science, gut microbiome engineering, and soil nutrient biosensing, among others. New engineering methods including genetic refactoring, DNA-binding domain swapping, detection threshold tuning, and phosphorylation cross-talk insulation are being used to increase the reliability of TCS sensor performance and tailor TCS signaling properties to the requirements of specific applications. There is now potential to combine these methods with large-scale gene synthesis and laboratory screening to discover the inputs sensed by many uncharacterized TCSs and develop a large new family of genetically-encoded sensors that respond to an unrivaled breadth of stimuli.

Entities:  

Year:  2021        PMID: 34917859      PMCID: PMC8670732          DOI: 10.1016/j.coisb.2021.100398

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  98 in total

1.  Engineering RGB color vision into Escherichia coli.

Authors:  Jesus Fernandez-Rodriguez; Felix Moser; Miryoung Song; Christopher A Voigt
Journal:  Nat Chem Biol       Date:  2017-05-22       Impact factor: 15.040

2.  The Pseudomonas aeruginosa PAO1 Two-Component Regulator CarSR Regulates Calcium Homeostasis and Calcium-Induced Virulence Factor Production through Its Regulatory Targets CarO and CarP.

Authors:  Manita Guragain; Michelle M King; Kerry S Williamson; Ailyn C Pérez-Osorio; Tatsuya Akiyama; Sharmily Khanam; Marianna A Patrauchan; Michael J Franklin
Journal:  J Bacteriol       Date:  2016-01-11       Impact factor: 3.490

3.  A two-component signal transduction system involved in nickel sensing in the cyanobacterium Synechocystis sp. PCC 6803.

Authors:  Luis López-Maury; Mario García-Domínguez; Francisco J Florencio; José C Reyes
Journal:  Mol Microbiol       Date:  2002-01       Impact factor: 3.501

4.  Transcriptional response of Escherichia coli to external copper.

Authors:  Kaneyoshi Yamamoto; Akira Ishihama
Journal:  Mol Microbiol       Date:  2005-04       Impact factor: 3.501

5.  Acid-adaptive genes of Helicobacter pylori.

Authors:  Yi Wen; Elizabeth A Marcus; Uday Matrubutham; Martin A Gleeson; David R Scott; George Sachs
Journal:  Infect Immun       Date:  2003-10       Impact factor: 3.441

6.  The Bacillus subtilis YufLM two-component system regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium.

Authors:  Kousei Tanaka; Kazuo Kobayashi; Naotake Ogasawara
Journal:  Microbiology       Date:  2003-09       Impact factor: 2.777

7.  Signaling and DNA-binding activities of the Staphylococcus aureus HssR-HssS two-component system required for heme sensing.

Authors:  Devin L Stauff; Victor J Torres; Eric P Skaar
Journal:  J Biol Chem       Date:  2007-07-16       Impact factor: 5.157

8.  A convolutional neural network for the prediction and forward design of ribozyme-based gene-control elements.

Authors:  Calvin M Schmidt; Christina D Smolke
Journal:  Elife       Date:  2021-04-16       Impact factor: 8.140

9.  A general strategy to construct small molecule biosensors in eukaryotes.

Authors:  Justin Feng; Benjamin W Jester; Christine E Tinberg; Daniel J Mandell; Mauricio S Antunes; Raj Chari; Kevin J Morey; Xavier Rios; June I Medford; George M Church; Stanley Fields; David Baker
Journal:  Elife       Date:  2015-12-29       Impact factor: 8.140

10.  Artificial signaling in mammalian cells enabled by prokaryotic two-component system.

Authors:  Alain Mazé; Yaakov Benenson
Journal:  Nat Chem Biol       Date:  2019-12-16       Impact factor: 15.040

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  5 in total

1.  Development of Whole-Cell Biosensors for Screening of Peptidoglycan-Targeting Antibiotics in a Gram-Negative Bacterium.

Authors:  Jianhua Yin; Yiling Zhu; Yanqun Liang; Yuke Luo; Jie Lou; Xiao Hu; Qiu Meng; Tingheng Zhu; Zhiliang Yu
Journal:  Appl Environ Microbiol       Date:  2022-08-30       Impact factor: 5.005

Review 2.  Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.

Authors:  Claudia F Moratti; Colin Scott; Nicholas V Coleman
Journal:  Front Bioeng Biotechnol       Date:  2022-01-10

Review 3.  The Future Potential of Biosensors to Investigate the Gut-Brain Axis.

Authors:  Jiefei Wang; W Seth Childers
Journal:  Front Bioeng Biotechnol       Date:  2022-01-14

Review 4.  Strategies for Improving Small-Molecule Biosensors in Bacteria.

Authors:  Corwin A Miller; Joanne M L Ho; Matthew R Bennett
Journal:  Biosensors (Basel)       Date:  2022-01-25

5.  Real-time detection of response regulator phosphorylation dynamics in live bacteria.

Authors:  Ryan J Butcher; Jeffrey J Tabor
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-22       Impact factor: 12.779

  5 in total

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