Literature DB >> 33903769

Engineering AraC to make it responsive to light instead of arabinose.

Edoardo Romano1,2,3, Armin Baumschlager4, Emir Bora Akmeriç1,2, Navaneethan Palanisamy1,2,3, Moustafa Houmani4, Gregor Schmidt4, Mehmet Ali Öztürk1,2, Leonard Ernst5, Mustafa Khammash6, Barbara Di Ventura7,8.   

Abstract

The L-arabinose-responsive AraC and its cognate PBAD promoter underlie one of the most often used chemically inducible prokaryotic gene expression systems in microbiology and synthetic biology. Here, we change the sensing capability of AraC from L-arabinose to blue light, making its dimerization and the resulting PBAD activation light-inducible. We engineer an entire family of blue light-inducible AraC dimers in Escherichia coli (BLADE) to control gene expression in space and time. We show that BLADE can be used with pre-existing L-arabinose-responsive plasmids and strains, enabling optogenetic experiments without the need to clone. Furthermore, we apply BLADE to control, with light, the catabolism of L-arabinose, thus externally steering bacterial growth with a simple transformation step. Our work establishes BLADE as a highly practical and effective optogenetic tool with plug-and-play functionality-features that we hope will accelerate the broader adoption of optogenetics and the realization of its vast potential in microbiology, synthetic biology and biotechnology.

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Year:  2021        PMID: 33903769     DOI: 10.1038/s41589-021-00787-6

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  59 in total

1.  From dusk till dawn: one-plasmid systems for light-regulated gene expression.

Authors:  Robert Ohlendorf; Roee R Vidavski; Avigdor Eldar; Keith Moffat; Andreas Möglich
Journal:  J Mol Biol       Date:  2012-01-08       Impact factor: 5.469

2.  Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Authors:  Premkumar Jayaraman; Kavya Devarajan; Tze Kwang Chua; Hanzhong Zhang; Erry Gunawan; Chueh Loo Poh
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

3.  Repurposing Synechocystis PCC6803 UirS-UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli.

Authors:  Prabha Ramakrishnan; Jeffrey J Tabor
Journal:  ACS Synth Biol       Date:  2016-05-11       Impact factor: 5.110

4.  Dynamic Blue Light-Inducible T7 RNA Polymerases (Opto-T7RNAPs) for Precise Spatiotemporal Gene Expression Control.

Authors:  Armin Baumschlager; Stephanie K Aoki; Mustafa Khammash
Journal:  ACS Synth Biol       Date:  2017-10-18       Impact factor: 5.110

5.  A Miniaturized Escherichia coli Green Light Sensor with High Dynamic Range.

Authors:  Nicholas T Ong; Jeffrey J Tabor
Journal:  Chembiochem       Date:  2018-03-23       Impact factor: 3.164

Review 6.  Tunable recombinant protein expression in E. coli: promoter systems and genetic constraints.

Authors:  Lukas Marschall; Patrick Sagmeister; Christoph Herwig
Journal:  Appl Microbiol Biotechnol       Date:  2016-12-21       Impact factor: 4.813

7.  Engineering robust and tunable spatial structures with synthetic gene circuits.

Authors:  Wentao Kong; Andrew E Blanchard; Chen Liao; Ting Lu
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

8.  Optogenetic regulation of engineered cellular metabolism for microbial chemical production.

Authors:  Evan M Zhao; Yanfei Zhang; Justin Mehl; Helen Park; Makoto A Lalwani; Jared E Toettcher; José L Avalos
Journal:  Nature       Date:  2018-03-21       Impact factor: 49.962

9.  Plasmids for Independently Tunable, Low-Noise Expression of Two Genes.

Authors:  João P N Silva; Soraia Vidigal Lopes; Diogo J Grilo; Zach Hensel
Journal:  mSphere       Date:  2019-05-29       Impact factor: 4.389

10.  Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulation.

Authors:  Dirk Benzinger; Mustafa Khammash
Journal:  Nat Commun       Date:  2018-08-30       Impact factor: 14.919

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  6 in total

Review 1.  Optogenetic approaches in biotechnology and biomaterials.

Authors:  Vasily V Reshetnikov; Sviatlana V Smolskaya; Sofia G Feoktistova; Vladislav V Verkhusha
Journal:  Trends Biotechnol       Date:  2022-01-11       Impact factor: 21.942

Review 2.  Engineering Light-Control in Biology.

Authors:  Armin Baumschlager
Journal:  Front Bioeng Biotechnol       Date:  2022-04-28

Review 3.  Toward Multiplexed Optogenetic Circuits.

Authors:  Ari Dwijayanti; Congqiang Zhang; Chueh Loo Poh; Thomas Lautier
Journal:  Front Bioeng Biotechnol       Date:  2022-01-05

Review 4.  Optogenetics in bacteria - applications and opportunities.

Authors:  Florian Lindner; Andreas Diepold
Journal:  FEMS Microbiol Rev       Date:  2022-03-03       Impact factor: 16.408

5.  Signal amplification of araC pBAD using a standardized translation initiation region.

Authors:  Patrick J Shilling; Diana Khananisho; Alister J Cumming; Bill Söderström; Daniel O Daley
Journal:  Synth Biol (Oxf)       Date:  2022-07-05

Review 6.  Platforms for Optogenetic Stimulation and Feedback Control.

Authors:  Sant Kumar; Mustafa Khammash
Journal:  Front Bioeng Biotechnol       Date:  2022-06-08
  6 in total

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