Literature DB >> 29413955

Speeding up enzyme discovery and engineering with ultrahigh-throughput methods.

Hans Adrian Bunzel1, Xavier Garrabou1, Moritz Pott1, Donald Hilvert2.   

Abstract

Exploring the sequence space of enzyme catalysts is ultimately a numbers game. Ultrahigh-throughput screening methods for rapid analysis of millions of variants are therefore increasingly important for investigating sequence-function relationships, searching large metagenomic libraries for interesting activities, and accelerating enzyme evolution in the laboratory. Recent applications of such technologies are reviewed here, with a particular focus on the practical benefits of droplet-based microfluidics for the directed evolution of natural and artificial enzymes. Broader implementation of such rapid, cost-effective screening technologies is likely to redefine the way enzymes are studied and engineered for academic and industrial purposes.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29413955     DOI: 10.1016/j.sbi.2017.12.010

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  21 in total

1.  Directed evolution methods for overcoming trade-offs between protein activity and stability.

Authors:  Samuel D Stimple; Matthew D Smith; Peter M Tessier
Journal:  AIChE J       Date:  2019-10-09       Impact factor: 3.993

Review 2.  Robotics for enzyme technology: innovations and technological perspectives.

Authors:  Mandeep Dixit; Kusum Panchal; Dharini Pandey; Nikolaos E Labrou; Pratyoosh Shukla
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-10       Impact factor: 4.813

Review 3.  An integrative approach to improving the biocatalytic reactions of whole cells expressing recombinant enzymes.

Authors:  Kyung-Chul Shin; Deok-Kun Oh
Journal:  World J Microbiol Biotechnol       Date:  2021-05-26       Impact factor: 3.312

Review 4.  Tailoring Proteins to Re-Evolve Nature: A Short Review.

Authors:  Angelica Jimenez-Rosales; Miriam V Flores-Merino
Journal:  Mol Biotechnol       Date:  2018-12       Impact factor: 2.695

5.  Screening and characterization of a diverse panel of metagenomic imine reductases for biocatalytic reductive amination.

Authors:  James R Marshall; Peiyuan Yao; Sarah L Montgomery; James D Finnigan; Thomas W Thorpe; Ryan B Palmer; Juan Mangas-Sanchez; Richard A M Duncan; Rachel S Heath; Kirsty M Graham; Darren J Cook; Simon J Charnock; Nicholas J Turner
Journal:  Nat Chem       Date:  2020-12-30       Impact factor: 24.427

Review 6.  Promoting Vibrations and the Function of Enzymes. Emerging Theoretical and Experimental Convergence.

Authors:  Vern L Schramm; Steven D Schwartz
Journal:  Biochemistry       Date:  2018-04-10       Impact factor: 3.162

7.  The molecular basis of spectral tuning in blue- and red-shifted flavin-binding fluorescent proteins.

Authors:  Katrin Röllen; Joachim Granzin; Alina Remeeva; Mehdi D Davari; Thomas Gensch; Vera V Nazarenko; Kirill Kovalev; Andrey Bogorodskiy; Valentin Borshchevskiy; Stefanie Hemmer; Ulrich Schwaneberg; Valentin Gordeliy; Karl-Erich Jaeger; Renu Batra-Safferling; Ivan Gushchin; Ulrich Krauss
Journal:  J Biol Chem       Date:  2021-04-13       Impact factor: 5.157

8.  E. coli Nickel-Iron Hydrogenase 1 Catalyses Non-native Reduction of Flavins: Demonstration for Alkene Hydrogenation by Old Yellow Enzyme Ene-reductases*.

Authors:  Shiny Joseph Srinivasan; Sarah E Cleary; Miguel A Ramirez; Holly A Reeve; Caroline E Paul; Kylie A Vincent
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-11       Impact factor: 15.336

9.  Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of α-Helix As Oxyanion-Binding Site.

Authors:  Elise A Naudin; Alastair G McEwen; Sophia K Tan; Pierre Poussin-Courmontagne; Jean-Louis Schmitt; Catherine Birck; William F DeGrado; Vladimir Torbeev
Journal:  J Am Chem Soc       Date:  2021-02-26       Impact factor: 16.383

10.  Discovery of Two Novel Oxidases Using a High-Throughput Activity Screen.

Authors:  Elzbieta Rembeza; Alessandro Boverio; Marco W Fraaije; Martin K M Engqvist
Journal:  Chembiochem       Date:  2021-11-18       Impact factor: 3.461

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