Literature DB >> 29407382

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly.

Kenta Okamoto1, Naoyuki Miyazaki2, Hemanth K N Reddy3, Max F Hantke3, Filipe R N C Maia3, Daniel S D Larsson3, Chantal Abergel4, Jean-Michel Claverie5, Janos Hajdu6, Kazuyoshi Murata7, Martin Svenda3.   

Abstract

Nucleocytoplasmic large DNA viruses (NCLDVs) blur the line between viruses and cells. Melbournevirus (MelV, family Marseilleviridae) belongs to a new family of NCLDVs. Here we present an electron cryo-microscopy structure of the MelV particle, with the large triangulation number T = 309 constructed by 3080 pseudo-hexagonal capsomers. The most distinct feature of the particle is a large and dense body (LDB) consistently found inside all particles. Electron cryo-tomography of 147 particles shows that the LDB is preferentially located in proximity to the probable lipid bilayer. The LDB is 30 nm in size and its density matches that of a genome/protein complex. The observed LDB reinforces the structural complexity of MelV, setting it apart from other NCLDVs.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Amoeba; Capsid; Cryo-electron microscopy; Marseilleviridae; Melbournevirus; NCLDV; Protein complex; Structure; Tomography; Virus

Mesh:

Substances:

Year:  2018        PMID: 29407382     DOI: 10.1016/j.virol.2018.01.021

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  14 in total

Review 1.  Biophysical research in Okazaki, Japan.

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Journal:  Biophys Rev       Date:  2020-02-15

2.  Adenovirus major core protein condenses DNA in clusters and bundles, modulating genome release and capsid internal pressure.

Authors:  Natalia Martín-González; Mercedes Hernando-Pérez; Gabriela N Condezo; Marta Pérez-Illana; Antonio Šiber; David Reguera; Philomena Ostapchuk; Patrick Hearing; Carmen San Martín; Pedro J de Pablo
Journal:  Nucleic Acids Res       Date:  2019-09-26       Impact factor: 16.971

3.  Current capsid assembly models of icosahedral nucleocytoviricota viruses.

Authors:  Yuejiao Xian; Chuan Xiao
Journal:  Adv Virus Res       Date:  2020-10-05       Impact factor: 9.937

Review 4.  Giant virus biology and diversity in the era of genome-resolved metagenomics.

Authors:  Frederik Schulz; Chantal Abergel; Tanja Woyke
Journal:  Nat Rev Microbiol       Date:  2022-07-28       Impact factor: 78.297

5.  Evolution of a major virion protein of the giant pandoraviruses from an inactivated bacterial glycoside hydrolase.

Authors:  Mart Krupovic; Natalya Yutin; Eugene Koonin
Journal:  Virus Evol       Date:  2020-11-30

Review 6.  The so far farthest reaches of the double jelly roll capsid protein fold.

Authors:  Carmen San Martín; Mark J van Raaij
Journal:  Virol J       Date:  2018-11-23       Impact factor: 4.099

7.  Atomic level three-dimensional structure of individual particles with XFELs.

Authors:  Changyong Song
Journal:  IUCrJ       Date:  2018-09-01       Impact factor: 4.769

8.  Near-atomic structure of a giant virus.

Authors:  Qianglin Fang; Dongjie Zhu; Irina Agarkova; Jagat Adhikari; Thomas Klose; Yue Liu; Zhenguo Chen; Yingyuan Sun; Michael L Gross; James L Van Etten; Xinzheng Zhang; Michael G Rossmann
Journal:  Nat Commun       Date:  2019-01-23       Impact factor: 14.919

9.  Medusavirus, a Novel Large DNA Virus Discovered from Hot Spring Water.

Authors:  Kazuyoshi Murata; Hiroyuki Ogata; Masaharu Takemura; Genki Yoshikawa; Romain Blanc-Mathieu; Chihong Song; Yoko Kayama; Tomohiro Mochizuki
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

10.  Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.

Authors:  Ida V Lundholm; Jonas A Sellberg; Tomas Ekeberg; Max F Hantke; Kenta Okamoto; Gijs van der Schot; Jakob Andreasson; Anton Barty; Johan Bielecki; Petr Bruza; Max Bucher; Sebastian Carron; Benedikt J Daurer; Ken Ferguson; Dirk Hasse; Jacek Krzywinski; Daniel S D Larsson; Andrew Morgan; Kerstin Mühlig; Maria Müller; Carl Nettelblad; Alberto Pietrini; Hemanth K N Reddy; Daniela Rupp; Mario Sauppe; Marvin Seibert; Martin Svenda; Michelle Swiggers; Nicusor Timneanu; Anatoli Ulmer; Daniel Westphal; Garth Williams; Alessandro Zani; Gyula Faigel; Henry N Chapman; Thomas Möller; Christoph Bostedt; Janos Hajdu; Tais Gorkhover; Filipe R N C Maia
Journal:  IUCrJ       Date:  2018-09-01       Impact factor: 4.769

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