Literature DB >> 29967176

Growth suppression of ice crystal basal face in the presence of a moderate ice-binding protein does not confer hyperactivity.

Maddalena Bayer-Giraldi1,2, Gen Sazaki2, Ken Nagashima2, Sepp Kipfstuhl3, Dmitry A Vorontsov2,4, Yoshinori Furukawa2.   

Abstract

Ice-binding proteins (IBPs) affect ice crystal growth by attaching to crystal faces. We present the effects on the growth of an ice single crystal caused by an ice-binding protein from the sea ice microalga Fragilariopsis cylindrus (fcIBP) that is characterized by the widespread domain of unknown function 3494 (DUF3494) and known to cause a moderate freezing point depression (below 1 °C). By the application of interferometry, bright-field microscopy, and fluorescence microscopy, we observed that the fcIBP attaches to the basal faces of ice crystals, thereby inhibiting their growth in the c direction and resulting in an increase in the effective supercooling with increasing fcIBP concentration. In addition, we observed that the fcIBP attaches to prism faces and inhibits their growth. In the event that the effective supercooling is small and crystals are faceted, this process causes an emergence of prism faces and suppresses crystal growth in the a direction. When the effective supercooling is large and ice crystals have developed into a dendritic shape, the suppression of prism face growth results in thinner dendrite branches, and growth in the a direction is accelerated due to enhanced latent heat dissipation. Our observations clearly indicate that the fcIBP occupies a separate position in the classification of IBPs due to the fact that it suppresses the growth of basal faces, despite its moderate freezing point depression.

Entities:  

Keywords:  DUF3494; Fragilariopsis cylindrus; growth rates; ice crystallization; ice-binding protein

Mesh:

Substances:

Year:  2018        PMID: 29967176      PMCID: PMC6055156          DOI: 10.1073/pnas.1807461115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

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Authors:  Andrew J Scotter; Christopher B Marshall; Laurie A Graham; Jack A Gilbert; Christopher P Garnham; Peter L Davies
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2.  Effect of annealing time of an ice crystal on the activity of type III antifreeze protein.

Authors:  Manabu Takamichi; Yoshiyuki Nishimiya; Ai Miura; Sakae Tsuda
Journal:  FEBS J       Date:  2007-11-19       Impact factor: 5.542

Review 3.  Protein stability during freezing: separation of stresses and mechanisms of protein stabilization.

Authors:  Bakul S Bhatnagar; Robin H Bogner; Michael J Pikal
Journal:  Pharm Dev Technol       Date:  2007       Impact factor: 3.133

4.  Antifreeze glycopeptide adsorption on single crystal ice surfaces using ellipsometry.

Authors:  P W Wilson; D Beaglehole; A L Devries
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

5.  Algal ice-binding proteins change the structure of sea ice.

Authors:  James A Raymond
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-02       Impact factor: 11.205

Review 6.  Ice-Binding Proteins and Their Function.

Authors:  Maya Bar Dolev; Ido Braslavsky; Peter L Davies
Journal:  Annu Rev Biochem       Date:  2016-04-25       Impact factor: 23.643

7.  Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus.

Authors:  Jing Cheng; Yuichi Hanada; Ai Miura; Sakae Tsuda; Hidemasa Kondo
Journal:  Biochem J       Date:  2016-09-09       Impact factor: 3.857

8.  Antifreeze effect of carboxylated ε-poly-L-lysine on the growth kinetics of ice crystals.

Authors:  Dmitry A Vorontsov; Gen Sazaki; Suong-Hyu Hyon; Kazuaki Matsumura; Yoshinori Furukawa
Journal:  J Phys Chem B       Date:  2014-08-18       Impact factor: 2.991

9.  Cryo-protective effect of an ice-binding protein derived from Antarctic bacteria.

Authors:  Marco Mangiagalli; Maya Bar-Dolev; Pietro Tedesco; Antonino Natalello; Aleksei Kaleda; Stefania Brocca; Donatella de Pascale; Sandra Pucciarelli; Cristina Miceli; Ido Braslavsky; Marina Lotti
Journal:  FEBS J       Date:  2016-12-26       Impact factor: 5.542

10.  Oscillations and accelerations of ice crystal growth rates in microgravity in presence of antifreeze glycoprotein impurity in supercooled water.

Authors:  Yoshinori Furukawa; Ken Nagashima; Shun-Ichi Nakatsubo; Izumi Yoshizaki; Haruka Tamaru; Taro Shimaoka; Takehiko Sone; Etsuro Yokoyama; Salvador Zepeda; Takanori Terasawa; Harutoshi Asakawa; Ken-Ichiro Murata; Gen Sazaki
Journal:  Sci Rep       Date:  2017-03-06       Impact factor: 4.379

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  4 in total

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Authors:  Tatsuya Arai; Akari Yamauchi; Yue Yang; Shiv Mohan Singh; Yuji C Sasaki; Sakae Tsuda
Journal:  Sci Rep       Date:  2022-09-14       Impact factor: 4.996

Review 2.  Peptidic Antifreeze Materials: Prospects and Challenges.

Authors:  Romà Surís-Valls; Ilja K Voets
Journal:  Int J Mol Sci       Date:  2019-10-17       Impact factor: 5.923

3.  Snow flea antifreeze peptide for cryopreservation of lactic acid bacteria.

Authors:  Xu Chen; Jinhong Wu; Xiaozhen Li; Fujia Yang; Dan Huang; Jianlian Huang; Shaoyun Wang; Vincent Guyonnet
Journal:  NPJ Sci Food       Date:  2022-02-03

4.  Inhibition of Ice Recrystallization by Nanotube-Forming Cyclic Peptides.

Authors:  Romà Surís-Valls; Tim P Hogervorst; Sandra M C Schoenmakers; Marco M R M Hendrix; Lech Milroy; Ilja K Voets
Journal:  Biomacromolecules       Date:  2022-01-20       Impact factor: 6.988

  4 in total

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