Literature DB >> 29385652

Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution.

Katalin Csilléry1,2, Alejandra Rodríguez-Verdugo3,4, Christian Rellstab2, Frédéric Guillaume1.   

Abstract

Over the last decade, the genomic revolution has offered the possibility to generate tremendous amounts of data that contain valuable information on the genetic basis of phenotypic traits, such as those linked to human diseases or those that allow for species to adapt to a changing environment. Most ecologically relevant traits are controlled by a large number of genes with small individual effects on trait variation, but that are connected with one another through complex developmental, metabolic and biochemical networks. As a result, it has recently been suggested that most adaptation events in natural populations are reached via correlated changes at multiple genes at a time, for which the name polygenic adaptation has been coined. The current challenge is to develop methods to extract the relevant information from genomic data to detect the signature of polygenic evolutionary change. The symposium entitled "Detecting the Genomic Signal of Polygenic Adaptation and the Role of Epistasis in Evolution" held in 2017 at the University of Zürich aimed at reviewing our current state of knowledge. In this review, we use the talks of the invited speakers to summarize some of the most recent developments in this field.
© 2018 John Wiley & Sons Ltd.

Entities:  

Keywords:  adaptation; evolutionary theory; experimental evolution; genomics; population genetics; quantitative genetics

Mesh:

Year:  2018        PMID: 29385652     DOI: 10.1111/mec.14499

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  16 in total

Review 1.  The importance of genomic variation for biodiversity, ecosystems and people.

Authors:  Madlen Stange; Rowan D H Barrett; Andrew P Hendry
Journal:  Nat Rev Genet       Date:  2020-10-16       Impact factor: 53.242

2.  Inferring the Nature of Missing Heritability in Human Traits Using Data from the GWAS Catalog.

Authors:  Eugenio López-Cortegano; Armando Caballero
Journal:  Genetics       Date:  2019-05-13       Impact factor: 4.562

Review 3.  Polygenic adaptation: a unifying framework to understand positive selection.

Authors:  Neda Barghi; Joachim Hermisson; Christian Schlötterer
Journal:  Nat Rev Genet       Date:  2020-06-29       Impact factor: 53.242

4.  Polygenic adaptation: From sweeps to subtle frequency shifts.

Authors:  Ilse Höllinger; Pleuni S Pennings; Joachim Hermisson
Journal:  PLoS Genet       Date:  2019-03-20       Impact factor: 6.020

5.  A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree.

Authors:  Rosane G Collevatti; Evandro Novaes; Orzenil B Silva-Junior; Lucas D Vieira; Matheus S Lima-Ribeiro; Dario Grattapaglia
Journal:  Heredity (Edinb)       Date:  2019-02-12       Impact factor: 3.821

6.  Population analysis reveals genetic structure of an invasive agricultural thrips pest related to invasion of greenhouses and suitable climatic space.

Authors:  Li-Jun Cao; Yong-Fu Gao; Ya-Jun Gong; Jin-Cui Chen; Min Chen; Ary Hoffmann; Shu-Jun Wei
Journal:  Evol Appl       Date:  2019-08-08       Impact factor: 5.183

7.  Integrating transcriptomic network reconstruction and eQTL analyses reveals mechanistic connections between genomic architecture and Brassica rapa development.

Authors:  Robert L Baker; Wen Fung Leong; Marcus T Brock; Matthew J Rubin; R J Cody Markelz; Stephen Welch; Julin N Maloof; Cynthia Weinig
Journal:  PLoS Genet       Date:  2019-09-12       Impact factor: 5.917

8.  Low adaptive potential for tolerance to ethynylestradiol, but also low toxicity, in a grayling population (Thymallus thymallus).

Authors:  Lucas Marques da Cunha; Diane Maitre; Claus Wedekind
Journal:  BMC Evol Biol       Date:  2019-12-16       Impact factor: 3.260

Review 9.  What can be learned by scanning the genome for molecular convergence in wild populations?

Authors:  Bonnie A Fraser; James R Whiting
Journal:  Ann N Y Acad Sci       Date:  2019-06-26       Impact factor: 5.691

10.  Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species.

Authors:  Christian Rellstab; Stefan Zoller; Christian Sailer; Andrew Tedder; Felix Gugerli; Kentaro K Shimizu; Rolf Holderegger; Alex Widmer; Martin C Fischer
Journal:  Mol Ecol       Date:  2020-10-14       Impact factor: 6.185

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