Literature DB >> 29380476

Light-Activated Control of Translation by Enzymatic Covalent mRNA Labeling.

Dongyang Zhang1, Cun Yu Zhou1, Kayla N Busby1, Seth C Alexander1, Neal K Devaraj1.   

Abstract

Activation of cellular protein expression upon visible-light photocleavage of small-molecule caging groups covalently attached to the 5' untranslated region (5' UTR) of an mRNA was achieved. These photocleavable caging groups are conjugated to in vitro transcribed mRNA (IVT-mRNA) through RNA transglycosylation, an enzymatic process in which a bacterial tRNA guanine transglycosylase (TGT) exchanges a guanine nucleobase in a specific 17-nucleotide motif (Tag) for synthetic pre-queuosine1 (preQ1 ) derivatives. The caging groups severely reduce mRNA translation efficiency when strategically placed in the 5' UTR. Using this method, we demonstrate the successful spatiotemporal photoregulation of gene expression with single-cell precision. Our method can be applied to therapeutically relevant chemically modified mRNA (mod-mRNA) transcripts. This strategy provides a modular and efficient approach for developing synthetic gene regulatory circuits, biotechnological applications, and therapeutic discovery.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA labeling; RNA modification; gene expression; optogenetics

Mesh:

Substances:

Year:  2018        PMID: 29380476      PMCID: PMC6052764          DOI: 10.1002/anie.201710917

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  31 in total

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Journal:  Nat Biotechnol       Date:  2013-09-08       Impact factor: 54.908

3.  In vitro synthesis of modified mRNA for induction of protein expression in human cells.

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Journal:  J Vis Exp       Date:  2014-11-13       Impact factor: 1.355

4.  Photo-mediated gene activation using caged RNA/DNA in zebrafish embryos.

Authors:  H Ando; T Furuta; R Y Tsien; H Okamoto
Journal:  Nat Genet       Date:  2001-08       Impact factor: 38.330

Review 5.  Translational regulation in development.

Authors:  D Curtis; R Lehmann; P D Zamore
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6.  Sequential gene silencing using wavelength-selective caged morpholino oligonucleotides.

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Journal:  Angew Chem Int Ed Engl       Date:  2014-08-01       Impact factor: 15.336

Review 7.  The mechanism of eukaryotic translation initiation and principles of its regulation.

Authors:  Richard J Jackson; Christopher U T Hellen; Tatyana V Pestova
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8.  Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation.

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9.  Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells.

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10.  Screening of mRNA Chemical Modification to Maximize Protein Expression with Reduced Immunogenicity.

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  16 in total

1.  A Yeast System for Discovering Optogenetic Inhibitors of Eukaryotic Translation Initiation.

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Review 2.  Translational control of gene function through optically regulated nucleic acids.

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Journal:  Chem Soc Rev       Date:  2021-11-29       Impact factor: 54.564

3.  DNA Tiling Enables Precise Acylation-Based Labeling and Control of mRNA.

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Journal:  Angew Chem Int Ed Engl       Date:  2021-11-16       Impact factor: 15.336

4.  Site-Specific and Enzymatic Cross-Linking of sgRNA Enables Wavelength-Selectable Photoactivated Control of CRISPR Gene Editing.

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5.  Photoactivatable Circular Caged Oligonucleotides for Transcriptome In Vivo Analysis (TIVA).

Authors:  Linlin Yang; Dora von Trentini; HyunBum Kim; Jai-Yoon Sul; James H Eberwine; Ivan J Dmochowski
Journal:  ChemPhotoChem       Date:  2021-06-23

6.  Site-Selective RNA Functionalization via DNA-Induced Structure.

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7.  Multiplexed Photoactivation of mRNA with Single-Cell Resolution.

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8.  Control of RNA with quinone methide reversible acylating reagents.

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9.  Solid-Phase-Supported Chemoenzymatic Synthesis of a Light-Activatable tRNA Derivative.

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Review 10.  Repurposing enzymatic transferase reactions for targeted labeling and analysis of DNA and RNA.

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