Literature DB >> 29363785

Revisiting the genomic hypomethylation hypothesis of aging.

Archana Unnikrishnan1,2, Niran Hadad1,3, Dustin R Masser1,4, Jordan Jackson1,2, Willard M Freeman1,4, Arlan Richardson1,2,5.   

Abstract

The genomic hypomethylation hypothesis of aging proposes that an overall decrease in global DNA methylation occurs with age, and it has been argued that the decrease in global DNA methylation could be an important factor in aging, resulting in the relaxation of gene expression regulation and abnormal gene expression. Since it was initially observed that DNA methylation decreased with age in 1974, 16 articles have been published describing the effect of age on global DNA methylation in various tissues from rodents and humans. We critically reviewed the publications on the effect of age on DNA methylation and the expression of the enzymes involved in DNA methylation to evaluate the validity of the hypomethylation hypothesis of aging. On the basis of the current scientific literature, we conclude that a decrease in the global methylation of the genome occurs in most if not all tissues/cells as an animal ages. However, age-related changes in DNA methylation in specific regions or at specific sites in the genome occur even though the global DNA methylation does not change.
© 2018 The Authors. Annals of the New York Academy of Sciences published by Wiley Periodicals, Inc. on behalf of New York Academy of Sciences.

Entities:  

Keywords:  DNA methylation; DNA methylation enzymes; aging; dietary restriction; gene expression; hypomethylation

Mesh:

Substances:

Year:  2018        PMID: 29363785      PMCID: PMC5934293          DOI: 10.1111/nyas.13533

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  70 in total

1.  Age related changes in 5-methylcytosine content in human peripheral leukocytes and placentas: an HPLC-based study.

Authors:  C Fuke; M Shimabukuro; A Petronis; J Sugimoto; T Oda; K Miura; T Miyazaki; C Ogura; Y Okazaki; Y Jinno
Journal:  Ann Hum Genet       Date:  2004-05       Impact factor: 1.670

2.  Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Authors:  Shalima S Nair; Marcel W Coolen; Clare Stirzaker; Jenny Z Song; Aaron L Statham; Dario Strbenac; Mark D Robinson; Susan J Clark
Journal:  Epigenetics       Date:  2011-01-01       Impact factor: 4.528

Review 3.  Emerging roles of TET proteins and 5-hydroxymethylcytosines in active DNA demethylation and beyond.

Authors:  Junjie U Guo; Yijing Su; Chun Zhong; Guo-li Ming; Hongjun Song
Journal:  Cell Cycle       Date:  2011-08-15       Impact factor: 4.534

4.  Expression of DNA methyltransferases is influenced by growth hormone in the long-living Ames dwarf mouse in vivo and in vitro.

Authors:  Vanessa L Armstrong; Sharlene Rakoczy; Lalida Rojanathammanee; Holly M Brown-Borg
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2013-11-07       Impact factor: 6.053

5.  Age-dependent relaxation of gene repression: increase of endogenous murine leukemia virus-related and globin-related RNA in brain and liver of mice.

Authors:  T Ono; R G Cutler
Journal:  Proc Natl Acad Sci U S A       Date:  1978-09       Impact factor: 11.205

6.  Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine.

Authors:  Khursheed Iqbal; Seung-Gi Jin; Gerd P Pfeifer; Piroska E Szabó
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

Review 7.  Tet family proteins and 5-hydroxymethylcytosine in development and disease.

Authors:  Li Tan; Yujiang Geno Shi
Journal:  Development       Date:  2012-06       Impact factor: 6.868

8.  Global epigenomic reconfiguration during mammalian brain development.

Authors:  Ryan Lister; Eran A Mukamel; Joseph R Nery; Mark Urich; Clare A Puddifoot; Nicholas D Johnson; Jacinta Lucero; Yun Huang; Andrew J Dwork; Matthew D Schultz; Miao Yu; Julian Tonti-Filippini; Holger Heyn; Shijun Hu; Joseph C Wu; Anjana Rao; Manel Esteller; Chuan He; Fatemeh G Haghighi; Terrence J Sejnowski; M Margarita Behrens; Joseph R Ecker
Journal:  Science       Date:  2013-07-04       Impact factor: 47.728

9.  Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal.

Authors:  Deqiang Sun; Min Luo; Mira Jeong; Benjamin Rodriguez; Zheng Xia; Rebecca Hannah; Hui Wang; Thuc Le; Kym F Faull; Rui Chen; Hongcang Gu; Christoph Bock; Alexander Meissner; Berthold Göttgens; Gretchen J Darlington; Wei Li; Margaret A Goodell
Journal:  Cell Stem Cell       Date:  2014-05-01       Impact factor: 24.633

10.  Multi-tissue DNA methylation age predictor in mouse.

Authors:  Thomas M Stubbs; Marc Jan Bonder; Anne-Katrien Stark; Felix Krueger; Ferdinand von Meyenn; Oliver Stegle; Wolf Reik
Journal:  Genome Biol       Date:  2017-04-11       Impact factor: 13.583

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  24 in total

Review 1.  Endothelial dysfunction and angiogenesis impairment in the ageing vasculature.

Authors:  Zoltan Ungvari; Stefano Tarantini; Tamas Kiss; Jonathan D Wren; Cory B Giles; Courtney T Griffin; Walter Lee Murfee; Pal Pacher; Anna Csiszar
Journal:  Nat Rev Cardiol       Date:  2018-09       Impact factor: 32.419

2.  Human aging DNA methylation signatures are conserved but accelerated in cultured fibroblasts.

Authors:  Gabriel Sturm; Andres Cardenas; Marie-Abèle Bind; Steve Horvath; Shuang Wang; Yunzhang Wang; Sara Hägg; Michio Hirano; Martin Picard
Journal:  Epigenetics       Date:  2019-06-12       Impact factor: 4.528

Review 3.  Analysis of DNA modifications in aging research.

Authors:  Dustin R Masser; Niran Hadad; Hunter Porter; Michael B Stout; Archana Unnikrishnan; David R Stanford; Willard M Freeman
Journal:  Geroscience       Date:  2018-01-11       Impact factor: 7.713

4.  Metabolic signature of the aging eye in mice.

Authors:  Yekai Wang; Allison Grenell; Fanyi Zhong; Michelle Yam; Allison Hauer; Elizabeth Gregor; Siyan Zhu; Daniel Lohner; Jiangjiang Zhu; Jianhai Du
Journal:  Neurobiol Aging       Date:  2018-08-07       Impact factor: 4.673

Review 5.  Making sense of the ageing methylome.

Authors:  Kirsten Seale; Steve Horvath; Andrew Teschendorff; Nir Eynon; Sarah Voisin
Journal:  Nat Rev Genet       Date:  2022-05-02       Impact factor: 59.581

Review 6.  Aging and cancer epigenetics: Where do the paths fork?

Authors:  Raúl Fernández Pérez; Juan Ramón Tejedor; Agustín Fernández Fernández; Mario Fernández Fraga
Journal:  Aging Cell       Date:  2022-09-14       Impact factor: 11.005

Review 7.  Molecular and cellular mechanisms underlying the pathogenesis of Alzheimer's disease.

Authors:  Tiantian Guo; Denghong Zhang; Yuzhe Zeng; Timothy Y Huang; Huaxi Xu; Yingjun Zhao
Journal:  Mol Neurodegener       Date:  2020-07-16       Impact factor: 14.195

8.  DNA methylation in genes of longevity-regulating pathways: association with obesity and metabolic complications.

Authors:  Francisca Salas-Pérez; Omar Ramos-Lopez; María L Mansego; Fermín I Milagro; José L Santos; José I Riezu-Boj; J Alfredo Martínez
Journal:  Aging (Albany NY)       Date:  2019-03-29       Impact factor: 5.682

9.  Cellular hallmarks of aging emerge in the ovary prior to primordial follicle depletion.

Authors:  Victor A Ansere; Samim Ali-Mondal; Roshini Sathiaseelan; Driele N Garcia; José V V Isola; Jéssica D Henseb; Tatiana D Saccon; Sarah R Ocañas; Kyla B Tooley; Michael B Stout; Augusto Schneider; Willard M Freeman
Journal:  Mech Ageing Dev       Date:  2020-12-28       Impact factor: 5.432

Review 10.  DNA Methylation in Atherosclerosis: A New Perspective.

Authors:  Yan Zhang; Jun Mei; Jing Li; Ying Zhang; Qingbing Zhou; Fengqin Xu
Journal:  Evid Based Complement Alternat Med       Date:  2021-06-23       Impact factor: 2.629

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