Literature DB >> 29348367

A pathway for mitotic chromosome formation.

Johan H Gibcus1, Kumiko Samejima2, Anton Goloborodko3, Itaru Samejima2, Natalia Naumova1, Johannes Nuebler3, Masato T Kanemaki4, Linfeng Xie5, James R Paulson5, William C Earnshaw6, Leonid A Mirny7, Job Dekker8,9.   

Abstract

Mitotic chromosomes fold as compact arrays of chromatin loops. To identify the pathway of mitotic chromosome formation, we combined imaging and Hi-C analysis of synchronous DT40 cell cultures with polymer simulations. Here we show that in prophase, the interphase organization is rapidly lost in a condensin-dependent manner, and arrays of consecutive 60-kilobase (kb) loops are formed. During prometaphase, ~80-kb inner loops are nested within ~400-kb outer loops. The loop array acquires a helical arrangement with consecutive loops emanating from a central "spiral staircase" condensin scaffold. The size of helical turns progressively increases to ~12 megabases during prometaphase. Acute depletion of condensin I or II shows that nested loops form by differential action of the two condensins, whereas condensin II is required for helical winding.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 29348367      PMCID: PMC5924687          DOI: 10.1126/science.aao6135

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  90 in total

1.  A two-step scaffolding model for mitotic chromosome assembly.

Authors:  Kazuhiro Maeshima; Ulrich K Laemmli
Journal:  Dev Cell       Date:  2003-04       Impact factor: 12.270

2.  Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites.

Authors:  P N Cockerill; W T Garrard
Journal:  Cell       Date:  1986-01-31       Impact factor: 41.582

3.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

4.  Polymer models of meiotic and mitotic chromosomes.

Authors:  J F Marko; E D Siggia
Journal:  Mol Biol Cell       Date:  1997-11       Impact factor: 4.138

5.  Formation of Chromosomal Domains by Loop Extrusion.

Authors:  Geoffrey Fudenberg; Maxim Imakaev; Carolyn Lu; Anton Goloborodko; Nezar Abdennur; Leonid A Mirny
Journal:  Cell Rep       Date:  2016-05-19       Impact factor: 9.423

6.  The protein composition of mitotic chromosomes determined using multiclassifier combinatorial proteomics.

Authors:  Shinya Ohta; Jimi-Carlo Bukowski-Wills; Luis Sanchez-Pulido; Flavia de Lima Alves; Laura Wood; Zhuo A Chen; Melpi Platani; Lutz Fischer; Damien F Hudson; Chris P Ponting; Tatsuo Fukagawa; William C Earnshaw; Juri Rappsilber
Journal:  Cell       Date:  2010-09-03       Impact factor: 41.582

7.  THE ULTRASTRUCTURE OF A MAMMALIAN CELL DURING THE MITOTIC CYCLE.

Authors:  E ROBBINS; N K GONATAS
Journal:  J Cell Biol       Date:  1964-06       Impact factor: 10.539

8.  A New Chicken Genome Assembly Provides Insight into Avian Genome Structure.

Authors:  Wesley C Warren; LaDeana W Hillier; Chad Tomlinson; Patrick Minx; Milinn Kremitzki; Tina Graves; Chris Markovic; Nathan Bouk; Kim D Pruitt; Francoise Thibaud-Nissen; Valerie Schneider; Tamer A Mansour; C Titus Brown; Aleksey Zimin; Rachel Hawken; Mitch Abrahamsen; Alexis B Pyrkosz; Mireille Morisson; Valerie Fillon; Alain Vignal; William Chow; Kerstin Howe; Janet E Fulton; Marcia M Miller; Peter Lovell; Claudio V Mello; Morgan Wirthlin; Andrew S Mason; Richard Kuo; David W Burt; Jerry B Dodgson; Hans H Cheng
Journal:  G3 (Bethesda)       Date:  2017-01-05       Impact factor: 3.154

9.  The genome of the chicken DT40 bursal lymphoma cell line.

Authors:  János Molnár; Ádám Póti; Orsolya Pipek; Marcin Krzystanek; Nnennaya Kanu; Charles Swanton; Gábor E Tusnády; Zoltan Szallasi; István Csabai; Dávid Szüts
Journal:  G3 (Bethesda)       Date:  2014-09-15       Impact factor: 3.154

10.  Molecular structure of bottlebrush polymers in melts.

Authors:  Jarosław Paturej; Sergei S Sheiko; Sergey Panyukov; Michael Rubinstein
Journal:  Sci Adv       Date:  2016-11-11       Impact factor: 14.136

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  198 in total

Review 1.  Towards a Unified Model of SMC Complex Function.

Authors:  Markus Hassler; Indra A Shaltiel; Christian H Haering
Journal:  Curr Biol       Date:  2018-11-05       Impact factor: 10.834

Review 2.  Two major mechanisms of chromosome organization.

Authors:  Leonid A Mirny; Maxim Imakaev; Nezar Abdennur
Journal:  Curr Opin Cell Biol       Date:  2019-06-20       Impact factor: 8.382

Review 3.  Condensins and cohesins - one of these things is not like the other!

Authors:  Robert V Skibbens
Journal:  J Cell Sci       Date:  2019-02-07       Impact factor: 5.285

4.  Revealing chromatin organization in metaphase chromosomes.

Authors:  Beat Fierz
Journal:  EMBO J       Date:  2019-03-04       Impact factor: 11.598

5.  Mammalian cell growth dynamics in mitosis.

Authors:  Teemu P Miettinen; Joon Ho Kang; Lucy F Yang; Scott R Manalis
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

Review 6.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

Review 7.  The three-dimensional organization of the genome in cellular senescence and age-associated diseases.

Authors:  Shane A Evans; Jeremy Horrell; Nicola Neretti
Journal:  Semin Cell Dev Biol       Date:  2018-07-27       Impact factor: 7.727

8.  Using contact statistics to characterize structure transformation of biopolymer ensembles.

Authors:  Priyojit Das; Rosela Golloshi; Rachel Patton McCord; Tongye Shen
Journal:  Phys Rev E       Date:  2020-01       Impact factor: 2.529

9.  Maintenance of CTCF- and Transcription Factor-Mediated Interactions from the Gametes to the Early Mouse Embryo.

Authors:  Yoon Hee Jung; Isaac Kremsky; Hannah B Gold; M Jordan Rowley; Kanchana Punyawai; Alyx Buonanotte; Xiaowen Lyu; Brianna J Bixler; Anthony W S Chan; Victor G Corces
Journal:  Mol Cell       Date:  2019-05-02       Impact factor: 17.970

10.  Condensin controls mitotic chromosome stiffness and stability without forming a structurally contiguous scaffold.

Authors:  Mingxuan Sun; Ronald Biggs; Jessica Hornick; John F Marko
Journal:  Chromosome Res       Date:  2018-08-24       Impact factor: 5.239

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