Literature DB >> 30031215

The three-dimensional organization of the genome in cellular senescence and age-associated diseases.

Shane A Evans1, Jeremy Horrell2, Nicola Neretti3.   

Abstract

Recent advances in genomics and imaging technologies have increased our ability to interrogate the 3D conformation of chromosomes and to better understand principles of organization and dynamics, as well as how their alteration can lead to disease. In this review we describe how these technologies have shed new light into the role of the 3D organization of the genome in defining cellular states in aging and age-associated diseases. We compare the genomic organization in cellular senescence and cancer, discuss the role of the lamina in maintaining the structural and functional integrity of the genome, and we highlight the recent findings on how this organization breaks down in disease states.
Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Aging; Cancer; Cytoplasmic DNA; Hi-C; Inflammation; Senescence

Mesh:

Year:  2018        PMID: 30031215      PMCID: PMC6661233          DOI: 10.1016/j.semcdb.2018.07.022

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  65 in total

Review 1.  The nuclear lamina and heterochromatin: a complex relationship.

Authors:  Erin M Bank; Yosef Gruenbaum
Journal:  Biochem Soc Trans       Date:  2011-12       Impact factor: 5.407

2.  Transcriptional repression mediated by repositioning of genes to the nuclear lamina.

Authors:  K L Reddy; J M Zullo; E Bertolino; H Singh
Journal:  Nature       Date:  2008-02-13       Impact factor: 49.962

3.  3D genome reconstruction from chromosomal contacts.

Authors:  Annick Lesne; Julien Riposo; Paul Roger; Axel Cournac; Julien Mozziconacci
Journal:  Nat Methods       Date:  2014-09-21       Impact factor: 28.547

Review 4.  The 3D genome in transcriptional regulation and pluripotency.

Authors:  David U Gorkin; Danny Leung; Bing Ren
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

Review 5.  The senescence-associated secretory phenotype: the dark side of tumor suppression.

Authors:  Jean-Philippe Coppé; Pierre-Yves Desprez; Ana Krtolica; Judith Campisi
Journal:  Annu Rev Pathol       Date:  2010       Impact factor: 23.472

Review 6.  Three-dimensional genome architecture: players and mechanisms.

Authors:  Ana Pombo; Niall Dillon
Journal:  Nat Rev Mol Cell Biol       Date:  2015-03-11       Impact factor: 94.444

7.  Identification of a novel senolytic agent, navitoclax, targeting the Bcl-2 family of anti-apoptotic factors.

Authors:  Yi Zhu; Tamara Tchkonia; Heike Fuhrmann-Stroissnigg; Haiming M Dai; Yuanyuan Y Ling; Michael B Stout; Tamar Pirtskhalava; Nino Giorgadze; Kurt O Johnson; Cory B Giles; Jonathan D Wren; Laura J Niedernhofer; Paul D Robbins; James L Kirkland
Journal:  Aging Cell       Date:  2016-03-18       Impact factor: 9.304

8.  Cell-cycle dynamics of chromosomal organization at single-cell resolution.

Authors:  Takashi Nagano; Yaniv Lubling; Csilla Várnai; Carmel Dudley; Wing Leung; Yael Baran; Netta Mendelson Cohen; Steven Wingett; Peter Fraser; Amos Tanay
Journal:  Nature       Date:  2017-07-05       Impact factor: 49.962

9.  Higher-order unfolding of satellite heterochromatin is a consistent and early event in cell senescence.

Authors:  Eric C Swanson; Benjamin Manning; Hong Zhang; Jeanne B Lawrence
Journal:  J Cell Biol       Date:  2013-12-23       Impact factor: 10.539

10.  Analysis of the relationship between coexpression domains and chromatin 3D organization.

Authors:  María E Soler-Oliva; José A Guerrero-Martínez; Valentina Bachetti; José C Reyes
Journal:  PLoS Comput Biol       Date:  2017-09-13       Impact factor: 4.475

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  4 in total

Review 1.  Assaying three-dimensional cellular architecture using X-ray tomographic and correlated imaging approaches.

Authors:  Peter O Bayguinov; Max R Fisher; James A J Fitzpatrick
Journal:  J Biol Chem       Date:  2020-09-16       Impact factor: 5.157

2.  Painting chromosomes in the nucleus.

Authors:  Cori K Cahoon; Diana E Libuda
Journal:  Elife       Date:  2019-05-14       Impact factor: 8.140

Review 3.  Cellular senescence: a key therapeutic target in aging and diseases.

Authors:  Lei Zhang; Louise E Pitcher; Matthew J Yousefzadeh; Laura J Niedernhofer; Paul D Robbins; Yi Zhu
Journal:  J Clin Invest       Date:  2022-08-01       Impact factor: 19.456

Review 4.  A description of the relationship in healthy longevity and aging-related disease: from gene to protein.

Authors:  Xiaolin Ni; Zhaoping Wang; Danni Gao; Huiping Yuan; Liang Sun; Xiaoquan Zhu; Qi Zhou; Ze Yang
Journal:  Immun Ageing       Date:  2021-06-25       Impact factor: 6.400

  4 in total

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