Literature DB >> 18255316

Stereotaxic white matter atlas based on diffusion tensor imaging in an ICBM template.

Susumu Mori1, Kenichi Oishi2, Hangyi Jiang3, Li Jiang4, Xin Li4, Kazi Akhter2, Kegang Hua3, Andreia V Faria2, Asif Mahmood4, Roger Woods5, Arthur W Toga6, G Bruce Pike7, Pedro Rosa Neto7, Alan Evans7, Jiangyang Zhang2, Hao Huang2, Michael I Miller8, Peter van Zijl3, John Mazziotta5.   

Abstract

Brain registration to a stereotaxic atlas is an effective way to report anatomic locations of interest and to perform anatomic quantification. However, existing stereotaxic atlases lack comprehensive coordinate information about white matter structures. In this paper, white matter-specific atlases in stereotaxic coordinates are introduced. As a reference template, the widely used ICBM-152 was used. The atlas contains fiber orientation maps and hand-segmented white matter parcellation maps based on diffusion tensor imaging (DTI). Registration accuracy by linear and non-linear transformation was measured, and automated template-based white matter parcellation was tested. The results showed a high correlation between the manual ROI-based and the automated approaches for normal adult populations. The atlases are freely available and believed to be a useful resource as a target template and for automated parcellation methods.

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Year:  2008        PMID: 18255316      PMCID: PMC2478641          DOI: 10.1016/j.neuroimage.2007.12.035

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  44 in total

1.  Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: application to white matter fiber tract mapping in the human brain.

Authors:  S Pajevic; C Pierpaoli
Journal:  Magn Reson Med       Date:  1999-09       Impact factor: 4.668

2.  Spatial transformations of diffusion tensor magnetic resonance images.

Authors:  D C Alexander; C Pierpaoli; P J Basser; J C Gee
Journal:  IEEE Trans Med Imaging       Date:  2001-11       Impact factor: 10.048

3.  Diffusion tensor imaging and axonal tracking in the human brainstem.

Authors:  B Stieltjes; W E Kaufmann; P C van Zijl; K Fredericksen; G D Pearlson; M Solaiyappan; S Mori
Journal:  Neuroimage       Date:  2001-09       Impact factor: 6.556

4.  Fiber tract-based atlas of human white matter anatomy.

Authors:  Setsu Wakana; Hangyi Jiang; Lidia M Nagae-Poetscher; Peter C M van Zijl; Susumu Mori
Journal:  Radiology       Date:  2003-11-26       Impact factor: 11.105

5.  Spatial normalization of diffusion tensor MRI using multiple channels.

Authors:  Hae-Jeong Park; Marek Kubicki; Martha E Shenton; Alexandre Guimond; Robert W McCarley; Stephan E Maier; Ron Kikinis; Ferenc A Jolesz; Carl-Fredrik Westin
Journal:  Neuroimage       Date:  2003-12       Impact factor: 6.556

6.  Diffusion tensor MR imaging of the human brain.

Authors:  C Pierpaoli; P Jezzard; P J Basser; A Barnett; G Di Chiro
Journal:  Radiology       Date:  1996-12       Impact factor: 11.105

7.  Application of Brodmann's area templates for ROI selection in white matter tractography studies.

Authors:  Paul Thottakara; Mariana Lazar; Sterling C Johnson; Andrew L Alexander
Journal:  Neuroimage       Date:  2005-10-21       Impact factor: 6.556

8.  Large deformation diffeomorphic metric mapping of vector fields.

Authors:  Yan Cao; Michael I Miller; Raimond L Winslow; Laurent Younes
Journal:  IEEE Trans Med Imaging       Date:  2005-09       Impact factor: 10.048

9.  Three-dimensional anisotropy contrast magnetic resonance imaging of the rat nervous system: MR axonography.

Authors:  T Nakada; H Matsuzawa
Journal:  Neurosci Res       Date:  1995-07       Impact factor: 3.304

10.  Imaging cortical association tracts in the human brain using diffusion-tensor-based axonal tracking.

Authors:  Susumu Mori; Walter E Kaufmann; Christos Davatzikos; Bram Stieltjes; Laura Amodei; Kim Fredericksen; Godfrey D Pearlson; Elias R Melhem; Meiyappan Solaiyappan; Gerald V Raymond; Hugo W Moser; Peter C M van Zijl
Journal:  Magn Reson Med       Date:  2002-02       Impact factor: 4.668

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  681 in total

1.  White matter microstructure varies with post-traumatic stress severity following medical trauma.

Authors:  Nathaniel G Harnett; Edward W Ference; Amy J Knight; David C Knight
Journal:  Brain Imaging Behav       Date:  2020-08       Impact factor: 3.978

2.  Quantitative analysis of brain pathology based on MRI and brain atlases--applications for cerebral palsy.

Authors:  Andreia V Faria; Alexander Hoon; Elaine Stashinko; Xin Li; Hangyi Jiang; Ameneh Mashayekh; Kazi Akhter; John Hsu; Kenichi Oishi; Jiangyang Zhang; Michael I Miller; Peter C M van Zijl; Susumu Mori
Journal:  Neuroimage       Date:  2010-11-05       Impact factor: 6.556

3.  Structural network alterations and neurological dysfunction in cerebral amyloid angiopathy.

Authors:  Yael D Reijmer; Panagiotis Fotiadis; Sergi Martinez-Ramirez; David H Salat; Aaron Schultz; Ashkan Shoamanesh; Alison M Ayres; Anastasia Vashkevich; Diana Rosas; Kristin Schwab; Alexander Leemans; Geert-Jan Biessels; Jonathan Rosand; Keith A Johnson; Anand Viswanathan; M Edip Gurol; Steven M Greenberg
Journal:  Brain       Date:  2014-11-02       Impact factor: 13.501

4.  Cortex Parcellation Associated Whole White Matter Parcellation in Individual Subjects.

Authors:  Patrick Schiffler; Jan-Gerd Tenberge; Heinz Wiendl; Sven G Meuth
Journal:  Front Hum Neurosci       Date:  2017-07-06       Impact factor: 3.169

5.  Aberrant White Matter Microstructure in Children and Adolescents With the Subtype of Prader-Willi Syndrome at High Risk for Psychosis.

Authors:  Akvile Lukoshe; Gerbrich E van den Bosch; Aad van der Lugt; Steven A Kushner; Anita C Hokken-Koelega; Tonya White
Journal:  Schizophr Bull       Date:  2017-09-01       Impact factor: 9.306

6.  Role of standardized and study-specific human brain diffusion tensor templates in inter-subject spatial normalization.

Authors:  Shengwei Zhang; Konstantinos Arfanakis
Journal:  J Magn Reson Imaging       Date:  2012-10-03       Impact factor: 4.813

7.  Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: a case study at 11.7 T.

Authors:  Manisha Aggarwal; Jiangyang Zhang; Olga Pletnikova; Barbara Crain; Juan Troncoso; Susumu Mori
Journal:  Neuroimage       Date:  2013-02-04       Impact factor: 6.556

8.  DTI-based segmentation and quantification of human brain lateral ventricular CSF volumetry and mean diffusivity: validation, age, gender effects and biophysical implications.

Authors:  Khader M Hasan; F Gerard Moeller; Ponnada A Narayana
Journal:  Magn Reson Imaging       Date:  2014-01-29       Impact factor: 2.546

9.  White matter microstructural deficits in 22q11.2 deletion syndrome.

Authors:  David R Roalf; J Eric Schmitt; Simon N Vandekar; Theodore D Satterthwaite; Russell T Shinohara; Kosha Ruparel; Mark A Elliott; Karthik Prabhakaran; Donna M McDonald-McGinn; Elaine H Zackai; Ruben C Gur; Beverly S Emanuel; Raquel E Gur
Journal:  Psychiatry Res Neuroimaging       Date:  2017-08-24       Impact factor: 2.376

10.  Ethnicity-Dependent Effects of Schizophrenia Risk Variants of the OLIG2 Gene on OLIG2 Transcription and White Matter Integrity.

Authors:  Hiroshi Komatsu; Hikaru Takeuchi; Yoshie Kikuchi; Chiaki Ono; Zhiqian Yu; Kunio Iizuka; Yuji Takano; Yoshihisa Kakuto; Shunichi Funakoshi; Takashi Ono; Junko Ito; Yasuto Kunii; Mizuki Hino; Atsuko Nagaoka; Yasushi Iwasaki; Hidenaga Yamamori; Yuka Yasuda; Michiko Fujimoto; Hirotsugu Azechi; Noriko Kudo; Ryota Hashimoto; Hirooki Yabe; Mari Yoshida; Yuko Saito; Akiyoshi Kakita; Nobuo Fuse; Ryuta Kawashima; Yasuyuki Taki; Hiroaki Tomita
Journal:  Schizophr Bull       Date:  2020-12-01       Impact factor: 9.306

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