Literature DB >> 29333197

Solving moment hierarchies for chemical reaction networks.

Supriya Krishnamurthy1, Eric Smith2,3,4,5.   

Abstract

The study of chemical reaction networks (CRN's) is a very active field. Earlier well-known results (Feinberg 1987 Chem. Enc. Sci. 42 2229, Anderson et al 2010 Bull. Math. Biol. 72 1947) identify a topological quantity called deficiency, for any CRN, which, when exactly equal to zero, leads to a unique factorized steady-state for these networks. No results exist however for the steady states of non-zero-deficiency networks. In this paper, we show how to write the full moment-hierarchy for any non-zero-deficiency CRN obeying mass-action kinetics, in terms of equations for the factorial moments. Using these, we can recursively predict values for lower moments from higher moments, reversing the procedure usually used to solve moment hierarchies. We show, for nontrivial examples, that in this manner we can predict any moment of interest, for CRN's with non-zero deficiency and non-factorizable steady states.

Entities:  

Keywords:  chemical reaction networks; infinite moment hierarchies; non-equilibrium steady states

Year:  2017        PMID: 29333197      PMCID: PMC5764546          DOI: 10.1088/1751-8121/aa89d0

Source DB:  PubMed          Journal:  J Phys A Math Theor        ISSN: 1751-8113            Impact factor:   2.132


  10 in total

1.  Regulation of noise in the expression of a single gene.

Authors:  Ertugrul M Ozbudak; Mukund Thattai; Iren Kurtser; Alan D Grossman; Alexander van Oudenaarden
Journal:  Nat Genet       Date:  2002-04-22       Impact factor: 38.330

2.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

3.  Product-form stationary distributions for deficiency zero chemical reaction networks.

Authors:  David F Anderson; Gheorghe Craciun; Thomas G Kurtz
Journal:  Bull Math Biol       Date:  2010-03-20       Impact factor: 1.758

4.  Intrinsic information carriers in combinatorial dynamical systems.

Authors:  Russ Harmer; Vincent Danos; Jérôme Feret; Jean Krivine; Walter Fontana
Journal:  Chaos       Date:  2010-09       Impact factor: 3.642

5.  Comparison of different moment-closure approximations for stochastic chemical kinetics.

Authors:  David Schnoerr; Guido Sanguinetti; Ramon Grima
Journal:  J Chem Phys       Date:  2015-11-14       Impact factor: 3.488

6.  Dissipation in noisy chemical networks: The role of deficiency.

Authors:  M Polettini; A Wachtel; M Esposito
Journal:  J Chem Phys       Date:  2015-11-14       Impact factor: 3.488

7.  Stochastic analysis of biochemical reaction networks with absolute concentration robustness.

Authors:  David F Anderson; Germán A Enciso; Matthew D Johnston
Journal:  J R Soc Interface       Date:  2014-02-12       Impact factor: 4.118

8.  Generic strategies for chemical space exploration.

Authors:  Jakob L Andersen; Christoph Flamm; Daniel Merkle; Peter F Stadler
Journal:  Int J Comput Biol Drug Des       Date:  2014-05-28

9.  Fundamental limits on the suppression of molecular fluctuations.

Authors:  Ioannis Lestas; Glenn Vinnicombe; Johan Paulsson
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

10.  Product-Form Stationary Distributions for Deficiency Zero Networks with Non-mass Action Kinetics.

Authors:  David F Anderson; Simon L Cotter
Journal:  Bull Math Biol       Date:  2016-10-27       Impact factor: 1.758

  10 in total
  1 in total

1.  Intrinsic and Extrinsic Thermodynamics for Stochastic Population Processes with Multi-Level Large-Deviation Structure.

Authors:  Eric Smith
Journal:  Entropy (Basel)       Date:  2020-10-07       Impact factor: 2.524

  1 in total

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