Literature DB >> 31730377

Protein Stability in Titan's Subsurface Water Ocean.

Kyle P Martin1,2, Shannon M MacKenzie1, Jason W Barnes1, F Marty Ytreberg1,2.   

Abstract

Models of Titan predict that there is a subsurface ocean of water and ammonia under a layer of ice. Such an ocean would be important in the search for extraterrestrial life since it provides a potentially habitable environment. To evaluate how Earth-based proteins would behave in Titan's subsurface ocean environment, we used molecular dynamics simulations to calculate the properties of proteins with the most common secondary structure types (alpha helix and beta sheet) in both Earth and Titan-like conditions. The Titan environment was simulated by using a temperature of 300 K, a pressure of 1000 bar, and a eutectic mixture of water and ammonia. We analyzed protein compactness, flexibility, and backbone dihedral distributions to identify differences between the two environments. Secondary structures in the Titan environment were found to be less long-lasting, less flexible, and had small differences in backbone dihedral preferences (e.g., in one instance a pi helix formed). These environment-driven differences could lead to changes in how these proteins interact with other biomolecules and therefore changes in how evolution would potentially shape proteins to function in subsurface ocean environments.

Entities:  

Keywords:  Biophysics; Molecular dynamics; Titan

Year:  2019        PMID: 31730377      PMCID: PMC7041334          DOI: 10.1089/ast.2018.1972

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  33 in total

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Journal:  Nature       Date:  2015-03-12       Impact factor: 49.962

3.  The process of tholin formation in Titan's upper atmosphere.

Authors:  J H Waite; D T Young; T E Cravens; A J Coates; F J Crary; B Magee; J Westlake
Journal:  Science       Date:  2007-05-11       Impact factor: 47.728

4.  Episodic outgassing as the origin of atmospheric methane on Titan.

Authors:  Gabriel Tobie; Jonathan I Lunine; Christophe Sotin
Journal:  Nature       Date:  2006-03-02       Impact factor: 49.962

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Journal:  Semin Cell Dev Biol       Date:  2018-02-01       Impact factor: 7.727

6.  Tindallia magadii gen. nov., sp. nov.: an alkaliphilic anaerobic ammonifier from soda lake deposits.

Authors:  V V Kevbrin; T N Zhilina; F A Rainey; G A Zavarzin
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Review 7.  Alkaliphilic Bacteria with Impact on Industrial Applications, Concepts of Early Life Forms, and Bioenergetics of ATP Synthesis.

Authors:  Laura Preiss; David B Hicks; Shino Suzuki; Thomas Meier; Terry Ann Krulwich
Journal:  Front Bioeng Biotechnol       Date:  2015-06-03

8.  A series of PDB-related databanks for everyday needs.

Authors:  Wouter G Touw; Coos Baakman; Jon Black; Tim A H te Beek; E Krieger; Robbie P Joosten; Gert Vriend
Journal:  Nucleic Acids Res       Date:  2014-10-28       Impact factor: 19.160

9.  CATH: comprehensive structural and functional annotations for genome sequences.

Authors:  Ian Sillitoe; Tony E Lewis; Alison Cuff; Sayoni Das; Paul Ashford; Natalie L Dawson; Nicholas Furnham; Roman A Laskowski; David Lee; Jonathan G Lees; Sonja Lehtinen; Romain A Studer; Janet Thornton; Christine A Orengo
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 19.160

10.  Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates.

Authors:  Stefano Campanaro; Laura Treu; Giorgio Valle
Journal:  BMC Evol Biol       Date:  2008-11-13       Impact factor: 3.260

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  1 in total

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Authors:  Miranda C Mudge; Brook L Nunn; Erin Firth; Marcela Ewert; Kianna Hales; William E Fondrie; William S Noble; Jonathan Toner; Bonnie Light; Karen A Junge
Journal:  Environ Microbiol       Date:  2021-04-12       Impact factor: 5.476

  1 in total

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