Literature DB >> 29326496

A Simple Method for Deriving the Confidence Regions for the Penalized Cox's Model via the Minimand Perturbation.

Chen-Yen Lin1, Susan Halabi2.   

Abstract

We propose a minimand perturbation method to derive the confidence regions for the regularized estimators for the Cox's proportional hazards model. Although the regularized estimation procedure produces a more stable point estimate, it remains challenging to provide an interval estimator or an analytic variance estimator for the associated point estimate. Based on the sandwich formula, the current variance estimator provides a simple approximation, but its finite sample performance is not entirely satisfactory. Besides, the sandwich formula can only provide variance estimates for the non-zero coefficients. In this article, we present a generic description for the perturbation method and then introduce a computation algorithm using the adaptive least absolute shrinkage and selection operator (LASSO) penalty. Through simulation studies, we demonstrate that our method can better approximate the limiting distribution of the adaptive LASSO estimator and produces more accurate inference compared with the sandwich formula. The simulation results also indicate the possibility of extending the applications to the adaptive elastic-net penalty. We further demonstrate our method using data from a phase III clinical trial in prostate cancer.

Entities:  

Keywords:  Confidence Regions; Cox Model; Minimand Perturbation; adaptive LASSO

Year:  2016        PMID: 29326496      PMCID: PMC5760195          DOI: 10.1080/03610926.2015.1085568

Source DB:  PubMed          Journal:  Commun Stat Theory Methods        ISSN: 0361-0926            Impact factor:   0.893


  12 in total

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2.  The lasso method for variable selection in the Cox model.

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Journal:  N Engl J Med       Date:  2012-08-15       Impact factor: 91.245

5.  Randomized, double-blind, placebo-controlled phase III trial comparing docetaxel and prednisone with or without bevacizumab in men with metastatic castration-resistant prostate cancer: CALGB 90401.

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6.  Prognostic model for predicting survival in men with hormone-refractory metastatic prostate cancer.

Authors:  Susan Halabi; Eric J Small; Philip W Kantoff; Michael W Kattan; Ellen B Kaplan; Nancy A Dawson; Ellis G Levine; Brent A Blumenstein; Nicholas J Vogelzang
Journal:  J Clin Oncol       Date:  2003-04-01       Impact factor: 44.544

7.  Abiraterone in metastatic prostate cancer without previous chemotherapy.

Authors:  Charles J Ryan; Matthew R Smith; Johann S de Bono; Arturo Molina; Christopher J Logothetis; Paul de Souza; Karim Fizazi; Paul Mainwaring; Josep M Piulats; Siobhan Ng; Joan Carles; Peter F A Mulders; Ethan Basch; Eric J Small; Fred Saad; Dirk Schrijvers; Hendrik Van Poppel; Som D Mukherjee; Henrik Suttmann; Winald R Gerritsen; Thomas W Flaig; Daniel J George; Evan Y Yu; Eleni Efstathiou; Allan Pantuck; Eric Winquist; Celestia S Higano; Mary-Ellen Taplin; Youn Park; Thian Kheoh; Thomas Griffin; Howard I Scher; Dana E Rathkopf
Journal:  N Engl J Med       Date:  2012-12-10       Impact factor: 91.245

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9.  A Perturbation Method for Inference on Regularized Regression Estimates.

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Journal:  J Am Stat Assoc       Date:  2012-01-24       Impact factor: 5.033

10.  Prognostic model predicting metastatic castration-resistant prostate cancer survival in men treated with second-line chemotherapy.

Authors:  Susan Halabi; Chen-Yen Lin; Eric J Small; Andrew J Armstrong; Ellen B Kaplan; Daniel Petrylak; Cora N Sternberg; Liji Shen; Stephane Oudard; Johann de Bono; Oliver Sartor
Journal:  J Natl Cancer Inst       Date:  2013-10-17       Impact factor: 13.506

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4.  Evaluating methods for Lasso selective inference in biomedical research: a comparative simulation study.

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  4 in total

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