| Literature DB >> 29317790 |
Soumaya Boumiza1,2, Sarra Bchir1, Hela Ben Nasr1,3, Ammar Abbassi1,4, Marie-Paule Jacob5, Xavier Norel5, Zouhair Tabka1, Karim Chahed1,6.
Abstract
AIMS: The impact of MMP-1 (-519A/G, -1607 1G/2G), MMP-3 Lys45Glu (A/G), MMP-7 -181A/G, and MMP-12 -82A/G variants and plasma MMP levels on obesity and microvascular reactivity in Tunisians.Entities:
Mesh:
Substances:
Year: 2017 PMID: 29317790 PMCID: PMC5727656 DOI: 10.1155/2017/6198526
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Details of PCR primer sequences and RFLP conditions.
| Gene | Polymorphism | SNP | Primer sequence | PCR conditions | Restriction enzyme |
|---|---|---|---|---|---|
| MMP-1 | -519A/G | rs1144393 | F: 5′-CATGGTGCTATCGCAATAGGGT-3′ | Initial denaturation of 3 min at 94°C, followed by 35 cycles of 45 s at 94°C, 1 min at 60°C, 45 s at 72°C, and a final extension at 72°C for 10 min | KpnI |
| MMP-1 | -1607 1G/2G | rs1799750 | F: 5′-TCGTGAGAATGTCTTCCCATT-3′ | Initial denaturation of 2 min at 95°C, followed by 35 cycles of 45 s at 95°C, 1 min at 56°C, 45 s at 72°C, and a final extension at 72°C for 10 min | XmnI |
| MMP-3 | Lys45Glu (A/G) | rs679620 | F: 5′-CAACACCATAGCAGTAGCAGC-3′ | Initial denaturation of 3 min at 95°C, followed by 35 cycles of 1 min at 95°C, 45 s at 60°C, 45 s at 72°C, and a final extension at 72°C for 10 min | TaqI |
| MMP-7 | -181A/G | rs11568818 | F: 5′-TGGTACCATAATGTCCTGAATG-3′ | Initial denaturation of 3 min at 94°C, followed by 35 cycles of 45 s at 94°C, 1 min at 56°C, 45 s at 72°C, and a final extension at 72°C for 10 min | EcoRI |
| MMP-12 | -82A/G | rs2276109 | F: 5′-GAGATAGTCAAGGGATGATATCAGC-3′ | Initial denaturation of 3 min at 94°C, followed by 35 cycles of 45 s at 94°C, 1 min at 60°C, 45 s at 72°C, and a final extension at 72°C for 10 min | PvuII |
F: forward; MMP: matrix metalloproteinase; PCR: polymerase chain reaction; R: reverse; RLFP: restriction fragment length polymorphism; SNP: single nucleotide polymorphism.
Figure 1Genotyping of MMP-1 (-519A/G; -1607 1G/2G), MMP-3 Lys45Glu (A/G), MMP-7 (-181A/G), and MMP-12 (-82A/G) by PCR-RFLP. (a) MMP-1 (-519A/G): the product (200 bp) was digested with KpnI. The A allele corresponds to the 176 bp and 24 bp fragments. The G allele corresponds to the 200 bp. (b) MMP-1 (-1607 1G/2G): the PCR product (118 bp) was digested with XmnI. The 1G allele corresponds to the 79 bp, 28 bp, and 11 bp. The 2G allele corresponds to the 107 bp and 11 bp fragments. (c) MMP-3 Lys45Glu (A/G): the PCR product (748 bp) was digested with TaqI. The G allele corresponds to the 432 bp and 316 bp fragments. The A allele corresponds to the 748 bp fragment. (d) MMP-7 (-181A/G): the PCR product (150 bp) was digested with EcoRI. The A allele corresponds to the 150 bp fragment. The G allele corresponds to the120 bp and 30 bp fragments. (e) MMP-12 (-82A/G): the PCR product (199 bp) was digested with PvuII. The A allele corresponds to the 199 bp fragment. The G allele corresponds to the 175 bp and 24 bp fragments.
Anthropometric, biochemical, and microvascular parameters of the study subjects.
| Parameters | All subjects | Obesity status | Classes of obesity | |||
|---|---|---|---|---|---|---|
| Nonobese (18.5 ≤ BMI < 25) | Obese (BMI ≥ 30) | Nonmorbidly obese | Morbidly obese | |||
| Class I (30 ≤ BMI < 35) | Class II (35 ≤ BMI < 40) | Class III (BMI ≥ 40) | ||||
|
| ||||||
| BMI (kg/m2) | 30 ± 0.44 | 22.87 ± 0.13 | 37.69 ± 0.5∗∗ | 32.16 ± 0.14 | 37.59 ± 0.21 | 45.78 ± 0.75#,ǂ |
| WC (cm) | 99.61 ± 1.2 | 79.93 ± 0.71 | 115.63 ± 1.06∗∗ | 105.69 ± 0.93 | 117.33 ± 1.37 | 128.16 ± 1.6#,ǂ |
| HC (cm) | 110.4 ± 1.06 | 95.07 ± 0.72 | 123.31 ± 1.12∗∗ | 113.82 ± 0.96 | 121.33 ± 1.65 | 137.13 ± 1.6#,ǂ |
| WHRratio | 0.89 ± 0.005 | 0.84 ± 0.08 | 0.93 ± 0.006∗∗ | 0.92 ± 0.009 | 0.97 ± 0.01 | 0.93 ± 0.11 |
| WHtRratio | 0.6 ± 0.007 | 0.47 ± 0.004 | 0.7 ± 0.006∗∗ | 0.63 ± 0.005 | 0.71 ± 0.008 | 0.8 ± 0.008 #,ǂ |
|
| ||||||
| SBP (mmHg) | 121.6 ± 0.8 | 116.5 ± 0.58 | 126.4 ± 1.34∗∗ | 126.5 ± 1.85 | 128.6 ± 3.4 | 125.1 ± 2.3 |
| DBP (mmHg) | 79.4 ± 0.47 | 77 ± 0.43 | 81.8 ± 0.8∗∗ | 81.3 ± 1 | 82.4 ± 2 | 82.2 ± 1.35 |
| MAP | 79.05 ± 0.19 | 84.4 ± 1.81 | 74.73 ± 3.06 | 69.8 ± 0.47 | 74.64 ± 0.7 | 82 ± 4.67 |
|
| ||||||
| hs-CRP (mg/dl) | 3.7 ± 0.28 | 1.25 ± 0.18 | 5.79 ± 0.42∗∗ | 4.58 ± 0.52 | 5.45 ± 0.89 | 7.42 ± 0.82# |
| FG (mmol/l) | 5.46 ± 0.07 | 5 ± 0.04 | 5.91 ± 0.12∗∗ | 5.69 ± 0.15 | 6.34 ± 0.34 | 5.98 ± 0.19 |
| TG (mmol/l) | 1.35 ± 0.04 | 1.15 ± 0.05 | 1.62 ± 0.06∗∗ | 1.55 ± 0.09 | 1.67 ± 0.11 | 1.69 ± 0.12 |
| TC (mmol/l) | 4.73 ± 0.05 | 4.45 ± 0.08 | 4.98 ± 0.07∗∗ | 4.96 ± 0.01 | 5.06 ± 0.13 | 4.97 ± 0.13 |
| HDL-C (mmol/l) | 1.18 ± 0.02 | 1.26 ± 0.03 | 1.11 ± 0.02∗∗ | 1.18 ± 0.03 | 1 ± 0.05 | 1.07 ± 0.03 |
| LDL-C (mmol/l) | 2.9 ± 0.05 | 2.67 ± 0.07 | 3.16 ± 0.07∗∗ | 3.08 ± 0.11 | 3.29 ± 0.14 | 3.23 ± 0.14 |
| ApoA1 (g/l) | 1.67 ± 0.01 | 1.65 ± 0.02 | 1.68 ± 0.02 | 1.67 ± 0.03 | 1.7 ± 0.05 | 1.69 ± 0.03 |
| ApoB (g/l) | 0.9 ± 0.01 | 0.87 ± 0.02 | 0.93 ± 0.02 | 0.93 ± 0.03 | 0.96 ± 0.04 | 0.89 ± 0.03 |
|
| ||||||
| FSBFmax (%) | 595 ± 52.45 | 914.25 ± 77.43 | 299.8 ± 41.0∗∗ | 377.9 ± 68.38 | 226.71 ± 89.5 | 243.25 ± 56.73 |
| FSBFRHS (%) | 1047.51 ± 65.78 | 946.02 ± 94.2 | 1139.6 ± 90.87 | 990.31 ± 138.7 | 1390 ± 228.2 | 1226.43 ± 137.02 |
| AUC (PU∗Sec) | 6623.8 ± 515.9 | 8168.6 ± 833.26 | 5307.84 ± 590.46∗∗ | 4863.54 ± 905.62 | 5424.45 ± 655.51 | 5723.01 ± 903.45 |
| Basal CVC (PU/mmHg) | 0.07 ± 0.007 | 0.09 ± 0.01 | 0.05 ± 0.003∗∗ | 0.06 ± 0.01 | 0.05 ± 0.01 | 0.06 ± 0.006 |
| Peak ACh-CVC (PU/mmHg) | 0.4 ± 0.03 | 0.48 ± 0.004 | 0.3 ± 0.03∗∗ | 0.26 ± 0.05 | 0.43 ± 0.18 | 0.32 ± 0.05 |
| Peak RHS-CVC (PU/mmHg) | 0.55 ± 0.02 | 0.59 ± 0.04 | 0.51 ± 0.03 | 0.67 ± 0.17 | 0.47 ± 0.06 | 0.53 ± 0.05 |
| ΔACh-CVC (PU/mmHg) | 0.32 ± 0.03 | 0.41 ± 0.04 | 0.25 ± 0.03∗∗ | 0.23 ± 0.05 | 0.41 ± 0.18 | 0.24 ± 0.05 |
| ΔRHS-CVC (PU/mmHg) | 0.46 ± 0.02 | 0.48 ± 0.0.04 | 0.44 ± 0.03 | 0.4 ± 0.06 | 0.43 ± 0.15 | 0.48 ± 0.05 |
∗∗ P < 0.001 (in nonobese versus obese subjects). §P < 0.05 (in obese class I versus obese class II). #P < 0.05 (in obese class I versus obese class III (morbid)). ǂP < 0.05 (in obese class II versus obese class III). ApoA1: apolipoprotein A1; ApoB: apolipoprotein B; AUC: area under the curve; BMI: body mass index; basal CVC: cutaneous vascular conductance; DBP: diastolic blood pressure; FG: fasting glucose; FSBFmax: maximum forearm skin blood flow; FSBFRHS: forearm skin blood flow response to heating the skin; HC: hip circumference; HDL-C: high-density lipoprotein cholesterol; hs-CRP: high-sensitivity C reactive protein; LDL-C: low-density lipoprotein cholesterol; MAP: mean arterial pressure; PU: perfusion unit; SBP: systolic blood pressure; TC: total cholesterol; TG: triglycerides. Data are expressed as mean ± SD.
Figure 2Variation of anthropometric parameters (BMI, WC, WHR, and WHtR) according to MMP-1 (-519A/G), MMP-1 (-1607 1G/2G), MMP-3 Lys45Glu (A/G), MMP-7 (-181A/G), and MMP-12 (-82A/G) polymorphisms in study subjects. Data are expressed as mean ± SD. Associations were analyzed using a dominant model. ∗P value remained significant after the Bonferroni correction. BMI: body mass index; WC: waist circumference; WHtR: waist-to-height ratio.
Genotype distribution and allele frequencies of MMP-1 (-519A/G; -1607 1G/2G), MMP-3 Lys45Glu (A/G), MMP-7 (-181A/G), and MMP-12 (-82A/G) polymorphisms among nonobese and obese subjects.
| SNP | Genotypes and alleles | Nonobese£ ( | Obese£ ( | Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|
|
| |||||
| rs1144393 | AA | 106 (53) | 65 (39.6) | 1 | |
| AG | 83 (41.5) | 85 (51.8) | 1.57 (1.02–2.41) |
| |
| GG | 11 (5.5) | 14 (8.6) | 1.95 (0.84–4.55) | 0.12 | |
| AG+GG | 94 (47) | 99 (60.4) | 1.61 (1.07–2.44) |
| |
| A | 295 (73.75) | 215 (65.55) | 1 | ||
| G | 105 (26.25) | 113 (34.45) | 1.47 (1.07–2.03) |
| |
|
| |||||
| rs1799750 | 1G1G | 24 (12) | 22 (13.4) | 1 | |
| 1G2G | 75 (37.7) | 62 (37.8) | 0.88 (0.47–1.63) | 0.68 | |
| 2G2G | 100 (50.3) | 80 (48.8) | 0.9 (0.45–1.73) | 0.73 | |
| 1G2G+2G2G | 175 (88) | 142 (86.6) | 0.87 (0.45–1.67) | 0.68 | |
| 1G | 123 (30.9) | 106 (32.32) | 1 | ||
| 2G | 275 (69.1) | 222 (67.68) | 0.93 (0.68–1.28) | 0.7 | |
|
| |||||
| rs679620 | AA | 69 (34.2) | 33 (20.1) | 1 | |
| AG | 100 (49.5) | 93 (56.7) | 1.92 (1.16–3.18) |
| |
| GG | 33 (16.3) | 38 (23.2) | 2.4 (1.30–4.5) |
| |
| AG+GG | 133 (65.8) | 131 (79.9) | 2.04 (1.26–3.3) |
| |
| A | 238 (58.91) | 159 (48.48) | 1 | ||
| G | 166 (41.09) | 169 (51.52) | 1.52 (1.13–2.04) |
| |
|
| |||||
| rs11568818 | AA | 53 (26.2) | 38 (23) | 1 | |
| AG | 103 (51) | 91 (55.2) | 1.23 (0.74–2.03) | 0.41 | |
| GG | 46 (22.8) | 36 (21.8) | 1.09 (0.60–1.99) | 0.77 | |
| AG+GG | 149 (73.8) | 127 (77) | 1.19 (0.73–1.92) | 0.48 | |
| A | 209 (51.73) | 167 (50.61) | 1 | ||
| G | 195 (48.27) | 163 (49.39) | 1.04 (0.78–1.4) | 0.76 | |
|
| |||||
| rs2276109 | AA | 178 (88.6) | 126 (76.4) | 1 | |
| AG | 23 (11.4) | 38 (23) | 2.33 (1.32–4.11) |
| |
| GG | 0 | 1 (0.6) | 2.28 | 0.99 | |
| AG+GG | 23 (11.4) | 39 (23.6) | 2.39 (1.36–4.2) |
| |
| A | 379 (94.28) | 290 (87.88) | 1 | ||
| G | 23 (5.72) | 40 (12.12) | 2.27 (1.33–3.88) |
|
The chi-square (χ2) test was used for the determination of genotype distribution between nonobese and obese subjects. Adjustments for age and sex were performed by logistic regression analysis. CI: confidence interval; OR: odds ratio. ∗P values remained significant after the Bonferroni correction. £The sum does not add up to the total because of a few missing genotypes in nonobese and obese subjects.
Genotype distribution and allele frequencies of MMP-1 (-519A/G; -1607 1G/2G), MMP-3 Lys45Glu (A/G), MMP-7 (-181A/G), and MMP-12 (-82A/G) polymorphisms among nonobese, nonmorbidly obese, and morbidly obese.
| SNP | Genotypes and alleles | Nonobese£ ( | Nonmorbidly obese£ ( | Adjusted OR (95% CI) |
| Morbidly obese£ ( | Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|---|---|
| MMP-1 (-519A/G) | ||||||||
| (rs1144393) | AA | 106 (53) | 41 (38.4) | 1 | 24 (42.1) | 1 | ||
| AG | 83 (41.5) | 59 (55.1) | 1.5 (0.9–2.5) | 0.12 | 26 (45.6) | 1.38 (0.72–2.64) | 0.33 | |
| GG | 11 (5.5) | 7 (6.5) | 1.6 (0.56–4.6) | 0.38 | 7 (12.3) | 3.01 (1.08–4.04) | 0.05 | |
| AG+GG | 94 (47) | 66 (61.6) | 0.66 (0.4–1.1) | 0.1 | 33 (57.9) | 1.56 (0.84–2.9) | 0.15 | |
| A | 295 (73.75) | 141 (65.89) | 1 | 74 (64.91) | 1 | |||
| G | 105 (26.25) | 73 (34.11) | 1.45 (1.01-2.08) | 0.06 | 40 (35.09) | 1.51 (0.97–2.36) | 0.06 | |
| MMP-1 (-1607 1G/2G) | ||||||||
| (rs1799750) | 1G1G | 24 (12) | 16 (15) | 1 | 6 (10.5) | 1 | ||
| 1G2G | 75 (37.7) | 41 (38.3) | 0.85 (0.39–1.86) | 0.68 | 21 (36.8) | 1.18 (0.41–3.41) | 0.75 | |
| 2G2G | 100 (50.3) | 50 (46.7) | 0.8 (0.37–1.72) | 0.57 | 30 (52.7) | 1.26 (0.45–3.52) | 0.65 | |
| 1G2G+2G2G | 175 (88) | 91 (85) | 0.82 (0.40–1.7) | 0.6 | 51 (89.5) | 1.23 (0.46–3.3) | 0.67 | |
| 1G | 123 (30.9) | 73 (34.11) | 1 | 33 (28.95) | 1 | |||
| 2G | 275 (69.1) | 141 (65.89) | 0.86 (0.60–1.23) | 0.41 | 81 (71.05) | 1.1 (0.70–1.73) | 0.68 | |
| MMP-3 Lys45Glu (A/G) | ||||||||
| (rs679620) | AA | 69 (34.2) | 25 (23.5) | 1 | 8 (13.8) | 1 | ||
| AG | 100 (49.5) | 59 (55.7) | 1.51 (0.84–2.73) | 0.16 | 34 (58.6) | 2.83 (1.20–6.68) |
| |
| GG | 33 (16.3) | 22 (20.8) | 1.8 (0.85–3.78) | 0.12 | 16 (27.6) | 4.93 (1.84–13.32) |
| |
| AG+GG | 133 (65.8) | 81 (76.5) | 1.58 (0.90–2.77) | 0.1 | 50 (86.2) | 3.31 (1.45–7.56) |
| |
| A | 238 (58.91) | 109 (51.42) | 1 | 50 (43.1) | 1 | |||
| G | 166 (41.09) | 103 (48.58) | 1.35 (0.96–1.9) | 0.07 | 66 (56.9) | 1.9 (1.24–2.87) |
| |
| MMP-7 (-181A/G) | ||||||||
| (rs11568818) | AA | 53 (26.2) | 32 (30.2) | 1 | 5 (8.5) | 1 | ||
| AG | 103 (51) | 56 (52.8) | 0.99 (0.60–1.78) | 0.99 | 36 (61) | 3.68 (1.40–6.71) |
| |
| GG | 46 (22.8) | 18 (17) | 0.65 (0.31–1.36) | 0.65 | 18 (30.5) | 3.4 (1.19–6.68) |
| |
| AG+GG | 149 (73.8) | 74 (69.8) | 0.88 (0.51–1.54) | 0.67 | 54 (91.5) | 3.58 (1.40–9.14) |
| |
| A | 209 (51.73) | 120 (56.6) | 1 | 46 (38.98) | 1 | |||
| G | 195 (48.27) | 92 (43.4) | 0.82 (0.58–1.14) | 0.25 | 72 (61.02) | 1.67 (1.10–2.54) |
| |
| MMP-12 (-82A/G) | ||||||||
| (rs2276109) | AA | 178 (88.6) | 82 (76.6) | 1 | 43 (74.1) | 1 | ||
| AG | 23 (11.4) | 25 (23.4) | 1.58 (0.90–2.77) |
| 14 (24.1) | 2.2 (1.21–3.97) |
| |
| GG | 0 | 0 | 0.99 | 1 (1.8) | 0.99 | |||
| AG+GG | 23 (11.4) | 25 (23.4) | 1.58 (0.90–2.77) |
| 15 (25.9) | 2.6 (1.21–5.56) |
| |
| A | 379 (94.28) | 189 (88.32) | 1 | 100 (86.21) | 1 | |||
| G | 23 (5.72) | 25 (11.68) | 2.17 (1.20–3.94) |
| 16 (13.79) | 2.63 (1.34–5.17) |
|
The chi-square (χ2) test was used for the determination of genotype distribution between nonobese and obese class I-II and between nonobese and obese class III. Adjustments for age and sex were performed by logistic regression analysis. Pa (nonobese versus obese class I-II) and Pb (nonobese versus obese class III (morbid)). CI: confidence interval; OR: odds ratio. ∗P value remained significant after the Bonferroni correction. £The sum does not add up to the total because of a few missing genotypes.