Literature DB >> 25687726

Obesity and genomics: role of technology in unraveling the complex genetic architecture of obesity.

Yamunah Devi Apalasamy1, Zahurin Mohamed.   

Abstract

Obesity is a complex and multifactorial disease that occurs as a result of the interaction between "obesogenic" environmental factors and genetic components. Although the genetic component of obesity is clear from the heritability studies, the genetic basis remains largely elusive. Successes have been achieved in identifying the causal genes for monogenic obesity using animal models and linkage studies, but these approaches are not fruitful for polygenic obesity. The developments of genome-wide association approach have brought breakthrough discovery of genetic variants for polygenic obesity where tens of new susceptibility loci were identified. However, the common SNPs only accounted for a proportion of heritability. The arrival of NGS technologies and completion of 1000 Genomes Project have brought other new methods to dissect the genetic architecture of obesity, for example, the use of exome genotyping arrays and deep sequencing of candidate loci identified from GWAS to study rare variants. In this review, we summarize and discuss the developments of these genetic approaches in human obesity.

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Year:  2015        PMID: 25687726     DOI: 10.1007/s00439-015-1533-x

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  171 in total

1.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

2.  Interactions among the alpha2-, beta2-, and beta3-adrenergic receptor genes and obesity-related phenotypes in the Quebec Family Study.

Authors:  O Ukkola; T Rankinen; S J Weisnagel; G Sun; L Pérusse; Y C Chagnon; J P Després; C Bouchard
Journal:  Metabolism       Date:  2000-08       Impact factor: 8.694

Review 3.  Evolutionary evidence of the effect of rare variants on disease etiology.

Authors:  I P Gorlov; O Y Gorlova; M L Frazier; M R Spitz; C I Amos
Journal:  Clin Genet       Date:  2010-09-10       Impact factor: 4.438

4.  The UDP-glucuronosyltransferase 1A9 enzyme is a peroxisome proliferator-activated receptor alpha and gamma target gene.

Authors:  Olivier Barbier; Lyne Villeneuve; Virginie Bocher; Coralie Fontaine; Ines Pineda Torra; Christian Duhem; Vladimir Kosykh; Jean-Charles Fruchart; Chantal Guillemette; Bart Staels
Journal:  J Biol Chem       Date:  2003-02-11       Impact factor: 5.157

5.  Adipocyte expression of the glucose-dependent insulinotropic polypeptide receptor involves gene regulation by PPARγ and histone acetylation.

Authors:  Su-Jin Kim; Cuilan Nian; Christopher H S McIntosh
Journal:  J Lipid Res       Date:  2011-01-18       Impact factor: 5.922

6.  Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.

Authors:  Joseph T Glessner; Kai Wang; Guiqing Cai; Olena Korvatska; Cecilia E Kim; Shawn Wood; Haitao Zhang; Annette Estes; Camille W Brune; Jonathan P Bradfield; Marcin Imielinski; Edward C Frackelton; Jennifer Reichert; Emily L Crawford; Jeffrey Munson; Patrick M A Sleiman; Rosetta Chiavacci; Kiran Annaiah; Kelly Thomas; Cuiping Hou; Wendy Glaberson; James Flory; Frederick Otieno; Maria Garris; Latha Soorya; Lambertus Klei; Joseph Piven; Kacie J Meyer; Evdokia Anagnostou; Takeshi Sakurai; Rachel M Game; Danielle S Rudd; Danielle Zurawiecki; Christopher J McDougle; Lea K Davis; Judith Miller; David J Posey; Shana Michaels; Alexander Kolevzon; Jeremy M Silverman; Raphael Bernier; Susan E Levy; Robert T Schultz; Geraldine Dawson; Thomas Owley; William M McMahon; Thomas H Wassink; John A Sweeney; John I Nurnberger; Hilary Coon; James S Sutcliffe; Nancy J Minshew; Struan F A Grant; Maja Bucan; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Gerard D Schellenberg; Hakon Hakonarson
Journal:  Nature       Date:  2009-04-28       Impact factor: 49.962

Review 7.  Energy metabolism, fuel selection and body weight regulation.

Authors:  J Galgani; E Ravussin
Journal:  Int J Obes (Lond)       Date:  2008-12       Impact factor: 5.095

8.  Common body mass index-associated variants confer risk of extreme obesity.

Authors:  Chris Cotsapas; Elizabeth K Speliotes; Ida J Hatoum; Danielle M Greenawalt; Radu Dobrin; Pek Y Lum; Christine Suver; Eugene Chudin; Daniel Kemp; Marc Reitman; Benjamin F Voight; Benjamin M Neale; Eric E Schadt; Joel N Hirschhorn; Lee M Kaplan; Mark J Daly
Journal:  Hum Mol Genet       Date:  2009-06-24       Impact factor: 6.150

9.  Genome-wide population-based association study of extremely overweight young adults--the GOYA study.

Authors:  Lavinia Paternoster; David M Evans; Ellen Aagaard Nohr; Claus Holst; Valerie Gaborieau; Paul Brennan; Anette Prior Gjesing; Niels Grarup; Daniel R Witte; Torben Jørgensen; Allan Linneberg; Torsten Lauritzen; Anelli Sandbaek; Torben Hansen; Oluf Pedersen; Katherine S Elliott; John P Kemp; Beate St Pourcain; George McMahon; Diana Zelenika; Jörg Hager; Mark Lathrop; Nicholas J Timpson; George Davey Smith; Thorkild I A Sørensen
Journal:  PLoS One       Date:  2011-09-15       Impact factor: 3.240

10.  A meta-analysis identifies new loci associated with body mass index in individuals of African ancestry.

Authors:  Keri L Monda; Gary K Chen; Kira C Taylor; Cameron Palmer; Todd L Edwards; Leslie A Lange; Maggie C Y Ng; Adebowale A Adeyemo; Matthew A Allison; Lawrence F Bielak; Guanjie Chen; Mariaelisa Graff; Marguerite R Irvin; Suhn K Rhie; Guo Li; Yongmei Liu; Youfang Liu; Yingchang Lu; Michael A Nalls; Yan V Sun; Mary K Wojczynski; Lisa R Yanek; Melinda C Aldrich; Adeyinka Ademola; Christopher I Amos; Elisa V Bandera; Cathryn H Bock; Angela Britton; Ulrich Broeckel; Quiyin Cai; Neil E Caporaso; Chris S Carlson; John Carpten; Graham Casey; Wei-Min Chen; Fang Chen; Yii-Der I Chen; Charleston W K Chiang; Gerhard A Coetzee; Ellen Demerath; Sandra L Deming-Halverson; Ryan W Driver; Patricia Dubbert; Mary F Feitosa; Ye Feng; Barry I Freedman; Elizabeth M Gillanders; Omri Gottesman; Xiuqing Guo; Talin Haritunians; Tamara Harris; Curtis C Harris; Anselm J M Hennis; Dena G Hernandez; Lorna H McNeill; Timothy D Howard; Barbara V Howard; Virginia J Howard; Karen C Johnson; Sun J Kang; Brendan J Keating; Suzanne Kolb; Lewis H Kuller; Abdullah Kutlar; Carl D Langefeld; Guillaume Lettre; Kurt Lohman; Vaneet Lotay; Helen Lyon; Joann E Manson; William Maixner; Yan A Meng; Kristine R Monroe; Imran Morhason-Bello; Adam B Murphy; Josyf C Mychaleckyj; Rajiv Nadukuru; Katherine L Nathanson; Uma Nayak; Amidou N'diaye; Barbara Nemesure; Suh-Yuh Wu; M Cristina Leske; Christine Neslund-Dudas; Marian Neuhouser; Sarah Nyante; Heather Ochs-Balcom; Adesola Ogunniyi; Temidayo O Ogundiran; Oladosu Ojengbede; Olufunmilayo I Olopade; Julie R Palmer; Edward A Ruiz-Narvaez; Nicholette D Palmer; Michael F Press; Evandine Rampersaud; Laura J Rasmussen-Torvik; Jorge L Rodriguez-Gil; Babatunde Salako; Eric E Schadt; Ann G Schwartz; Daniel A Shriner; David Siscovick; Shad B Smith; Sylvia Wassertheil-Smoller; Elizabeth K Speliotes; Margaret R Spitz; Lara Sucheston; Herman Taylor; Bamidele O Tayo; Margaret A Tucker; David J Van Den Berg; Digna R Velez Edwards; Zhaoming Wang; John K Wiencke; Thomas W Winkler; John S Witte; Margaret Wrensch; Xifeng Wu; James J Yang; Albert M Levin; Taylor R Young; Neil A Zakai; Mary Cushman; Krista A Zanetti; Jing Hua Zhao; Wei Zhao; Yonglan Zheng; Jie Zhou; Regina G Ziegler; Joseph M Zmuda; Jyotika K Fernandes; Gary S Gilkeson; Diane L Kamen; Kelly J Hunt; Ida J Spruill; Christine B Ambrosone; Stefan Ambs; Donna K Arnett; Larry Atwood; Diane M Becker; Sonja I Berndt; Leslie Bernstein; William J Blot; Ingrid B Borecki; Erwin P Bottinger; Donald W Bowden; Gregory Burke; Stephen J Chanock; Richard S Cooper; Jingzhong Ding; David Duggan; Michele K Evans; Caroline Fox; W Timothy Garvey; Jonathan P Bradfield; Hakon Hakonarson; Struan F A Grant; Ann Hsing; Lisa Chu; Jennifer J Hu; Dezheng Huo; Sue A Ingles; Esther M John; Joanne M Jordan; Edmond K Kabagambe; Sharon L R Kardia; Rick A Kittles; Phyllis J Goodman; Eric A Klein; Laurence N Kolonel; Loic Le Marchand; Simin Liu; Barbara McKnight; Robert C Millikan; Thomas H Mosley; Badri Padhukasahasram; L Keoki Williams; Sanjay R Patel; Ulrike Peters; Curtis A Pettaway; Patricia A Peyser; Bruce M Psaty; Susan Redline; Charles N Rotimi; Benjamin A Rybicki; Michèle M Sale; Pamela J Schreiner; Lisa B Signorello; Andrew B Singleton; Janet L Stanford; Sara S Strom; Michael J Thun; Mara Vitolins; Wei Zheng; Jason H Moore; Scott M Williams; Shamika Ketkar; Xiaofeng Zhu; Alan B Zonderman; Charles Kooperberg; George J Papanicolaou; Brian E Henderson; Alex P Reiner; Joel N Hirschhorn; Ruth J F Loos; Kari E North; Christopher A Haiman
Journal:  Nat Genet       Date:  2013-04-14       Impact factor: 38.330

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  9 in total

1.  Hoxa5 undergoes dynamic DNA methylation and transcriptional repression in the adipose tissue of mice exposed to high-fat diet.

Authors:  L Parrillo; V Costa; G A Raciti; M Longo; R Spinelli; R Esposito; C Nigro; V Vastolo; A Desiderio; F Zatterale; A Ciccodicola; P Formisano; C Miele; F Beguinot
Journal:  Int J Obes (Lond)       Date:  2016-03-16       Impact factor: 5.095

Review 2.  Gene and environment interaction: Is the differential susceptibility hypothesis relevant for obesity?

Authors:  Roberta Dalle Molle; Hajar Fatemi; Alain Dagher; Robert D Levitan; Patricia P Silveira; Laurette Dubé
Journal:  Neurosci Biobehav Rev       Date:  2016-12-23       Impact factor: 8.989

Review 3.  The Evolving Genomic Landscape of Barrett's Esophagus and Esophageal Adenocarcinoma.

Authors:  Gianmarco Contino; Thomas L Vaughan; David Whiteman; Rebecca C Fitzgerald
Journal:  Gastroenterology       Date:  2017-07-14       Impact factor: 22.682

4.  Resting-State Brain and the FTO Obesity Risk Allele: Default Mode, Sensorimotor, and Salience Network Connectivity Underlying Different Somatosensory Integration and Reward Processing between Genotypes.

Authors:  Gaia Olivo; Lyle Wiemerslage; Emil K Nilsson; Linda Solstrand Dahlberg; Anna L Larsen; Marcela Olaya Búcaro; Veronica P Gustafsson; Olga E Titova; Marcus Bandstein; Elna-Marie Larsson; Christian Benedict; Samantha J Brooks; Helgi B Schiöth
Journal:  Front Hum Neurosci       Date:  2016-02-17       Impact factor: 3.169

5.  Role of MMP-1 (-519A/G, -1607 1G/2G), MMP-3 (Lys45Glu), MMP-7 (-181A/G), and MMP-12 (-82A/G) Variants and Plasma MMP Levels on Obesity-Related Phenotypes and Microvascular Reactivity in a Tunisian Population.

Authors:  Soumaya Boumiza; Sarra Bchir; Hela Ben Nasr; Ammar Abbassi; Marie-Paule Jacob; Xavier Norel; Zouhair Tabka; Karim Chahed
Journal:  Dis Markers       Date:  2017-11-26       Impact factor: 3.434

Review 6.  Epigenetic contribution to obesity.

Authors:  Meriem Ouni; Annette Schürmann
Journal:  Mamm Genome       Date:  2020-04-11       Impact factor: 2.957

Review 7.  The promise of zebrafish as a model of metabolic syndrome.

Authors:  Khaled Benchoula; Alfi Khatib; Ashika Jaffar; Qamar Udin Ahmed; Wan Mohd Azizi Wan Sulaiman; Ridhwan Abd Wahab; Hesham R El-Seedi
Journal:  Exp Anim       Date:  2019-05-21

8.  Assessing 48 SNPs in Hypertensive Paediatric Patients and Young Adults with Review of Genetic Background of Essential Hypertension.

Authors:  Mirjam Močnik; Boris Zagradišnik; Nataša Marčun Varda
Journal:  Children (Basel)       Date:  2022-08-21

9.  Association between exonic polymorphism (rs629849, Gly1619Arg) of IGF2R gene and obesity in Korean population.

Authors:  Seung-Ae Yang
Journal:  J Exerc Rehabil       Date:  2015-10-30
  9 in total

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