Literature DB >> 29316506

Expansion microscopy: development and neuroscience applications.

Emmanouil D Karagiannis1, Edward S Boyden2.   

Abstract

Many neuroscience questions center around understanding how the molecules and wiring in neural circuits mechanistically yield behavioral functions, or go awry in disease states. However, mapping the molecules and wiring of neurons across the large scales of neural circuits has posed a great challenge. We recently developed expansion microscopy (ExM), a process in which we physically magnify biological specimens such as brain circuits. We synthesize throughout preserved brain specimens a dense, even mesh of a swellable polymer such as sodium polyacrylate, anchoring key biomolecules such as proteins and nucleic acids to the polymer. After mechanical homogenization of the specimen-polymer composite, we add water, and the polymer swells, pulling biomolecules apart. Due to the larger separation between molecules, ordinary microscopes can then perform nanoscale resolution imaging. We here review the ExM technology as well as applications to the mapping of synapses, cells, and circuits, including deployment in species such as Drosophila, mouse, non-human primate, and human.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29316506      PMCID: PMC5984670          DOI: 10.1016/j.conb.2017.12.012

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  28 in total

1.  Prevalent presence of periodic actin-spectrin-based membrane skeleton in a broad range of neuronal cell types and animal species.

Authors:  Jiang He; Ruobo Zhou; Zhuhao Wu; Monica A Carrasco; Peri T Kurshan; Jonathan E Farley; David J Simon; Guiping Wang; Boran Han; Junjie Hao; Evan Heller; Marc R Freeman; Kang Shen; Tom Maniatis; Marc Tessier-Lavigne; Xiaowei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-09       Impact factor: 11.205

2.  STED nanoscopy reveals the ubiquity of subcortical cytoskeleton periodicity in living neurons.

Authors:  Elisa D'Este; Dirk Kamin; Fabian Göttfert; Ahmed El-Hady; Stefan W Hell
Journal:  Cell Rep       Date:  2015-02-26       Impact factor: 9.423

3.  Striosome-dendron bouquets highlight a unique striatonigral circuit targeting dopamine-containing neurons.

Authors:  Jill R Crittenden; Paul W Tillberg; Michael H Riad; Yasuyuki Shima; Charles R Gerfen; Jeffrey Curry; David E Housman; Sacha B Nelson; Edward S Boyden; Ann M Graybiel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-19       Impact factor: 11.205

4.  Optical imaging. Expansion microscopy.

Authors:  Fei Chen; Paul W Tillberg; Edward S Boyden
Journal:  Science       Date:  2015-01-15       Impact factor: 47.728

5.  Expansion microscopy with conventional antibodies and fluorescent proteins.

Authors:  Tyler J Chozinski; Aaron R Halpern; Haruhisa Okawa; Hyeon-Jin Kim; Grant J Tremel; Rachel O L Wong; Joshua C Vaughan
Journal:  Nat Methods       Date:  2016-04-11       Impact factor: 28.547

6.  Superresolution expansion microscopy reveals the three-dimensional organization of the Drosophila synaptonemal complex.

Authors:  Cori K Cahoon; Zulin Yu; Yongfu Wang; Fengli Guo; Jay R Unruh; Brian D Slaughter; R Scott Hawley
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-31       Impact factor: 11.205

7.  Influenza virus exploits tunneling nanotubes for cell-to-cell spread.

Authors:  Amrita Kumar; Jin Hyang Kim; Priya Ranjan; Maureen G Metcalfe; Weiping Cao; Margarita Mishina; Shivaprakash Gangappa; Zhu Guo; Edward S Boyden; Sherif Zaki; Ian York; Adolfo García-Sastre; Michael Shaw; Suryaprakash Sambhara
Journal:  Sci Rep       Date:  2017-01-06       Impact factor: 4.379

8.  Nanoscale imaging of RNA with expansion microscopy.

Authors:  Fei Chen; Asmamaw T Wassie; Allison J Cote; Anubhav Sinha; Shahar Alon; Shoh Asano; Evan R Daugharthy; Jae-Byum Chang; Adam Marblestone; George M Church; Arjun Raj; Edward S Boyden
Journal:  Nat Methods       Date:  2016-07-04       Impact factor: 28.547

9.  Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies.

Authors:  Paul W Tillberg; Fei Chen; Kiryl D Piatkevich; Yongxin Zhao; Chih-Chieh Jay Yu; Brian P English; Linyi Gao; Anthony Martorell; Ho-Jun Suk; Fumiaki Yoshida; Ellen M DeGennaro; Douglas H Roossien; Guanyu Gong; Uthpala Seneviratne; Steven R Tannenbaum; Robert Desimone; Dawen Cai; Edward S Boyden
Journal:  Nat Biotechnol       Date:  2016-07-04       Impact factor: 54.908

10.  Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications.

Authors:  Yu Shrike Zhang; Jae-Byum Chang; Mario Moisés Alvarez; Grissel Trujillo-de Santiago; Julio Aleman; Byambaa Batzaya; Vaishali Krishnadoss; Aishwarya Aravamudhan Ramanujam; Mehdi Kazemzadeh-Narbat; Fei Chen; Paul W Tillberg; Mehmet Remzi Dokmeci; Edward S Boyden; Ali Khademhosseini
Journal:  Sci Rep       Date:  2016-03-15       Impact factor: 4.379

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  16 in total

Review 1.  Advanced imaging and labelling methods to decipher brain cell organization and function.

Authors:  Daniel Choquet; Matthieu Sainlos; Jean-Baptiste Sibarita
Journal:  Nat Rev Neurosci       Date:  2021-03-12       Impact factor: 34.870

Review 2.  New observations in neuroscience using superresolution microscopy.

Authors:  Michihiro Igarashi; Motohiro Nozumi; Ling-Gang Wu; Francesca Cella Zanacchi; István Katona; László Barna; Pingyong Xu; Mingshu Zhang; Fudong Xue; Edward Boyden
Journal:  J Neurosci       Date:  2018-10-31       Impact factor: 6.167

Review 3.  Beyond bulk: a review of single cell transcriptomics methodologies and applications.

Authors:  Ashwinikumar Kulkarni; Ashley G Anderson; Devin P Merullo; Genevieve Konopka
Journal:  Curr Opin Biotechnol       Date:  2019-04-10       Impact factor: 9.740

4.  Understanding cellular signaling and systems biology with precision: A perspective from ultrastructure and organelle studies in the Drosophila midgut.

Authors:  Chiwei Xu; Maria Ericsson; Norbert Perrimon
Journal:  Curr Opin Syst Biol       Date:  2018-07-20

Review 5.  Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila.

Authors:  Stephanie E Mohr; Sudhir Gopal Tattikota; Jun Xu; Jonathan Zirin; Yanhui Hu; Norbert Perrimon
Journal:  Genetics       Date:  2021-04-15       Impact factor: 4.562

Review 6.  Axo-axonic synapses: Diversity in neural circuit function.

Authors:  Kara K Cover; Brian N Mathur
Journal:  J Comp Neurol       Date:  2020-12-18       Impact factor: 3.028

7.  Multiplexed peroxidase-based electron microscopy labeling enables simultaneous visualization of multiple cell types.

Authors:  Qiyu Zhang; Wei-Chung A Lee; David L Paul; David D Ginty
Journal:  Nat Neurosci       Date:  2019-03-18       Impact factor: 24.884

8.  Interactions between Dpr11 and DIP-γ control selection of amacrine neurons in Drosophila color vision circuits.

Authors:  Kaushiki P Menon; Vivek Kulkarni; Shin-Ya Takemura; Michael Anaya; Kai Zinn
Journal:  Elife       Date:  2019-11-06       Impact factor: 8.140

9.  Scalable and Isotropic Expansion of Tissues with Simply Tunable Expansion Ratio.

Authors:  Han-Eol Park; Dongkil Choi; Ji Su Park; Changgon Sim; Sohyun Park; Sunah Kang; Hyunsoo Yim; Myungsun Lee; Jaeyoun Kim; Jinyoung Pac; Kunsoo Rhee; Junho Lee; Yunjong Lee; Yan Lee; Sung-Yon Kim
Journal:  Adv Sci (Weinh)       Date:  2019-09-30       Impact factor: 16.806

Review 10.  Cousins at work: How combining medical with optical imaging enhances in vivo cell tracking.

Authors:  Alessia Volpe; Ewelina Kurtys; Gilbert O Fruhwirth
Journal:  Int J Biochem Cell Biol       Date:  2018-06-28       Impact factor: 5.085

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