| Literature DB >> 29305411 |
Oliver Ebenhöh1,2, Stephanie Spelberg2.
Abstract
The photosynthetic carbon reduction cycle, or Calvin-Benson-Bassham (CBB) cycle, is now contained in every standard biochemistry textbook. Although the cycle was already proposed in 1954, it is still the subject of intense research, and even the structure of the cycle, i.e. the exact series of reactions, is still under debate. The controversy about the cycle's structure was fuelled by the findings of Gibbs and Kandler in 1956 and 1957, when they observed that radioactive 14CO2 was dynamically incorporated in hexoses in a very atypical and asymmetrical way, a phenomenon later termed the 'photosynthetic Gibbs effect'. Now, it is widely accepted that the photosynthetic Gibbs effect is not in contradiction to the reaction scheme proposed by CBB, but the arguments given have been largely qualitative and hand-waving. To fully appreciate the controversy and to understand the difficulties in interpreting the Gibbs effect, it is illustrative to illuminate the history of the discovery of the CBB cycle. We here give an account of central scientific advances and discoveries, which were essential prerequisites for the elucidation of the cycle. Placing the historic discoveries in the context of the modern textbook pathway scheme illustrates the complexity of the cycle and demonstrates why especially dynamic labelling experiments are far from easy to interpret. We conclude by arguing that it requires sound theoretical approaches to resolve conflicting interpretations and to provide consistent quantitative explanations.Entities:
Keywords: Calvin cycle; Gibbs effect; carbon fixation; mathematical model
Mesh:
Substances:
Year: 2018 PMID: 29305411 PMCID: PMC5818666 DOI: 10.1042/BST20170245
Source DB: PubMed Journal: Biochem Soc Trans ISSN: 0300-5127 Impact factor: 5.407
Figure 1.Simulated dynamic incorporation of radioactive carbon during photosynthesis.
Displayed is a simulated time course of the incorporation of radioactive carbon dioxide into the CBB cycle intermediate fructose 6-phosphate. The six lines indicate the percentage of carbons labelled in each position with colours indicated in the legend. As observed in the Gibbs effect, labels are introduced in position 4 before position 3 and appear earlier in position 1 (2) than in 6 (5). For the simulation, the standard reaction scheme of the CBB cycle is assumed, where the transketolase, transaldolase and aldolase are considered to be reversible. Time on the x-axis is in arbitrary units.
Figure 2.Broad substrate specificity of transketolase.
(A) Schematic representation of all transketolase-catalysed reactions. Columns represent ketose-phosphates with m = 5.8 carbons, while rows represent aldo-phosphates with n = 3.6 carbons. Every possible reaction is indicated by an arrow, where the start and end squares stand for the substrates/products of the respective reaction. For example, the arrow leading from (n,m) = (4, 5) to (n,m) = (3, 6) represents the reaction E4P + X5P = GAP + F6P. The solid black arrows indicate the two standard reactions in the CBB cycle, the solid grey arrow a third reaction, which is also in agreement with the general transketolase reaction scheme, and is, in fact, a linear combination of the two solid black reactions. ‘Neutral reactions’ are neutral in the sense that substrates and products are the same chemical compounds (e.g. E4P + F6P = F6P + E4P), but isotopes are exchanged. Dashed grey arrows indicate reactions that are chemically feasible if 8-carbon sugars are included. (B) Alternative representation of the CBB cycle. This representation includes the full complexity introduced by the broad substrate specificity of the transketolase and aldolase enzymes. The rectangular scheme from A is ‘tilted’, thus appearing as a lozenge, to indicate a layer, in which isotope scrambling occurs. The black reactions include carbon fixation and reduction and are driven by external energy input. Green reactions represent phosphatases, which also display a high-energy gradient and are practically irreversible under physiological conditions. Red arrows represent the reversible aldolase reactions, and blue arrows represent isomerases and epimerases. In this representation, the separation of the cycle into energy-driven (black and green) and entropy-driven (grey, red and blue) reactions becomes visible.