Literature DB >> 29299847

Baekduia soli gen. nov., sp. nov., a novel bacterium isolated from the soil of Baekdu Mountain and proposal of a novel family name, Baekduiaceae fam. nov.

Dong-Shan An1, Muhammad Zubair Siddiqi2,3, Kyoung-Ho Kim4, Hong-Shan Yu5, Wan-Taek Im6,7.   

Abstract

A taxonomic study was conducted on BR7-21T, a bacterial strain isolated from the soil of a ginseng field in Baekdu Mountain. Comparative studies of the 16S rRNA gene sequence showed that the isolate was most closely related to Conexibacter woesei DSM 14684T, Solirubrobacter pauli ATCC BAA-492T, Patulibacter minatonensis JCM 12834T, with 93.8%, 92.4%, and 91.5% sequence similarity, respectively; each genus represented a family in the order Solirubrobacterales. Strain BR7-21T was Gram-reaction positive, non-spore forming, aerobic, non-motile, and short rod-shaped. It grew well on half-strength R2A medium. The G + C content of the genomic DNA was 73.9%. It contained meso-diaminopimelic acid in the cell wall and the major menaquinones were MK-7(H4) and MK-8(H4). The major fatty acids were summarized as (C16:1ω7c/iso-C15:0 2-OH), iso-C16:0, and C17:0 cyclo. On the basis of polyphasic evidence, it was proposed that strain BR7-21T should be placed in a new genus and species, for which the name Baekduia soli gen. nov., sp. nov. was proposed with the type strain BR7-21T (= KCTC 22257T = LMG 24797T). The family Baekduiaceae fam. nov. is proposed to encompass the genus Baekduia gen. nov.

Entities:  

Keywords:  16S rRNA gene; Baekdu Mountain; Baekduia soli; ginseng field; polyphasic taxonomy

Mesh:

Substances:

Year:  2018        PMID: 29299847     DOI: 10.1007/s12275-018-7107-6

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  15 in total

1.  Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus.

Authors:  Michelle A Furlong; David R Singleton; David C Coleman; William B Whitman
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

2.  An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa.

Authors:  Xiao-Yang Zhi; Wen-Jun Li; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2009-03       Impact factor: 2.747

3.  Nocardioides ginsengisegetis sp. nov., isolated from soil of a ginseng field.

Authors:  Wan-Taek Im; Se-Young Kim; Qing-Mei Liu; Jung-Eun Yang; Sung-Taik Lee; Tae-Hoo Yi
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

4.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

Review 6.  Peptidoglycan types of bacterial cell walls and their taxonomic implications.

Authors:  K H Schleifer; O Kandler
Journal:  Bacteriol Rev       Date:  1972-12

7.  Patulibacter minatonensis gen. nov., sp. nov., a novel actinobacterium isolated using an agar medium supplemented with superoxide dismutase, and proposal of Patulibacteraceae fam. nov.

Authors:  Yōko Takahashi; Atsuko Matsumoto; Kurimi Morisaki; Satoshi Ōmura
Journal:  Int J Syst Evol Microbiol       Date:  2006-02       Impact factor: 2.747

8.  Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria.

Authors:  Paolo Monciardini; Linda Cavaletti; Peter Schumann; Manfred Rohde; Stefano Donadio
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

9.  Solirubrobacter pauli gen. nov., sp. nov., a mesophilic bacterium within the Rubrobacteridae related to common soil clones.

Authors:  David R Singleton; Michelle A Furlong; Aaron D Peacock; David C White; David C Coleman; William B Whitman
Journal:  Int J Syst Evol Microbiol       Date:  2003-03       Impact factor: 2.747

10.  Description of Patulibacter americanus sp. nov., isolated from biological soil crusts, emended description of the genus Patulibacter Takahashi et al. 2006 and proposal of Solirubrobacterales ord. nov. and Thermoleophilales ord. nov.

Authors:  Gundlapally S N Reddy; Ferran Garcia-Pichel
Journal:  Int J Syst Evol Microbiol       Date:  2009-01       Impact factor: 2.747

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