Literature DB >> 19244447

An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa.

Xiao-Yang Zhi1, Wen-Jun Li, Erko Stackebrandt.   

Abstract

The higher ranks of the class Actinobacteria were proposed and described in 1997. At each rank, the taxa were delineated from each other solely on the basis of 16S rRNA gene sequence phylogenetic clustering and taxon-specific 16S rRNA signature nucleotides. In the past 10 years, many novel members have been assigned to this class while, at the same time, some members have been reclassified. The new 16S rRNA gene sequence information and the changes in phylogenetic positions of some taxa influence decisions about which 16S rRNA nucleotides to define as taxon-specific. As a consequence, the phylogenetic relationships of Actinobacteria at higher levels may need to be reconstructed. Here, we present new 16S rRNA signature nucleotide patterns of taxa above the family level and indicate the affiliation of genera to families. These sets replace the signatures published in 1997. In addition, Actinopolysporineae subord. nov. and Actinopolysporaceae fam. nov. are proposed to accommodate the genus Actinopolyspora, Kineosporiineae subord. nov. and Kineosporiaceae fam. nov. are proposed to accommodate the genera Kineococcus, Kineosporia and Quadrisphaera, Beutenbergiaceae fam. nov. is proposed to accommodate the genera Beutenbergia, Georgenia and Salana and Cryptosporangiaceae fam. nov. is proposed to accommodate the genus Cryptosporangium. The families Nocardiaceae and Gordoniaceae are proposed to be combined in an emended family Nocardiaceae. Emended descriptions are also proposed for most of the other higher taxa.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19244447     DOI: 10.1099/ijs.0.65780-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  117 in total

1.  Description of gamma radiation-resistant Geodermatophilus dictyosporus sp. nov. to accommodate the not validly named Geodermatophilus obscurus subsp. dictyosporus (Luedemann, 1968).

Authors:  Maria del Carmen Montero-Calasanz; Karima Hezbri; Markus Göker; Haïtham Sghaier; Manfred Rohde; Cathrin Spröer; Peter Schumann; Hans-Peter Klenk
Journal:  Extremophiles       Date:  2014-11-16       Impact factor: 2.395

2.  Comparative phylogenies of ribosomal proteins and the 16S rRNA gene at higher ranks of the class Actinobacteria.

Authors:  Zhitang Lu; Weiwei Zhang
Journal:  Curr Microbiol       Date:  2012-04-06       Impact factor: 2.188

Review 3.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

Review 4.  Taxonomy, Physiology, and Natural Products of Actinobacteria.

Authors:  Essaid Ait Barka; Parul Vatsa; Lisa Sanchez; Nathalie Gaveau-Vaillant; Cedric Jacquard; Jan P Meier-Kolthoff; Hans-Peter Klenk; Christophe Clément; Yder Ouhdouch; Gilles P van Wezel
Journal:  Microbiol Mol Biol Rev       Date:  2015-11-25       Impact factor: 11.056

5.  Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses.

Authors:  Daniel W Udwary; Erin A Gontang; Adam C Jones; Carla S Jones; Andrew W Schultz; Jaclyn M Winter; Jane Y Yang; Nicholas Beauchemin; Todd L Capson; Benjamin R Clark; Eduardo Esquenazi; Alessandra S Eustáquio; Kelle Freel; Lena Gerwick; William H Gerwick; David Gonzalez; Wei-Ting Liu; Karla L Malloy; Katherine N Maloney; Markus Nett; Joshawna K Nunnery; Kevin Penn; Alejandra Prieto-Davo; Thomas L Simmons; Sara Weitz; Micheal C Wilson; Louis S Tisa; Pieter C Dorrestein; Bradley S Moore
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

6.  Actinopolyspora algeriensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil.

Authors:  Atika Meklat; Noureddine Bouras; Abdelghani Zitouni; Florence Mathieu; Ahmed Lebrihi; Peter Schumann; Cathrin Spröer; Hans-Peter Klenk; Nasserdine Sabaou
Journal:  Extremophiles       Date:  2012-08-08       Impact factor: 2.395

7.  Spirillospora tritici sp. nov., a Novel Actinomycete Isolated from Rhizosphere Soil of Triticum aestivum L.

Authors:  Jing Song; Jiabin Wang; Tianyu Sun; Chuang Li; Hairong He; Linlin Shi; Xiaowei Guo; Junwei Zhao; Wensheng Xiang
Journal:  Curr Microbiol       Date:  2018-08-04       Impact factor: 2.188

8.  Schumannella soli sp. nov., a novel actinomycete isolated from mangrove soil by in situ cultivation.

Authors:  Feina Li; Qinpei Lu; Shuilin Liao; Li Tuo; Shaowei Liu; Qin Yang; Adong Shen; Chenghang Sun
Journal:  Antonie Van Leeuwenhoek       Date:  2021-08-02       Impact factor: 2.271

9.  Growth, cell division and sporulation in mycobacteria.

Authors:  Bhupender Singh; Jaydip Ghosh; Nurul M Islam; Santanu Dasgupta; Leif A Kirsebom
Journal:  Antonie Van Leeuwenhoek       Date:  2010-05-01       Impact factor: 2.271

10.  Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor.

Authors:  Beile Gao; Seiji Sugiman-Marangos; Murray S Junop; Radhey S Gupta
Journal:  BMC Struct Biol       Date:  2009-06-10
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.