| Literature DB >> 29295716 |
Yan Zhang1, Anson V Koehler2, Tao Wang1, Shane R Haydon3, Robin B Gasser4.
Abstract
BACKGROUND: Enterocytozoon bieneusi is reported to be a common microsporidian of humans and animals in various countries. However, E. bieneusi has yet to be recorded in animals in Australia. Here, we undertook the first molecular epidemiological investigation of E. bieneusi in three species of deer (Cervus elaphus, Dama dama and Rusa unicolor) that live in the catchment areas that supply the city of Melbourne with drinking water.Entities:
Keywords: Australia; Enterocytozoon bieneusi; Genotypes; Internal transcribed spacer (ITS) of nuclear ribosomal DNA; Prevalence; Sambar deer
Mesh:
Substances:
Year: 2018 PMID: 29295716 PMCID: PMC5751821 DOI: 10.1186/s13071-017-2577-7
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
The numbers of faecal samples tested for Enterocytozoon bieneusi by nested PCR, and individual prevalences of this microsporidian in the nine of Melbourne’s water catchments
| Catchment | Total no. of samples tested | No. of test-positive samples | Prevalence (%) |
|---|---|---|---|
| Upper Yarra (UY) | 134 | 12 | 9.0 |
| Cardinia (CA) | 114 | 6 | 5.3 |
| O’Shannassay (OS) | 112 | 4 | 3.6 |
| Maroondah (MR) | 98 | 2 | 2.0 |
| Yan Yean (YY) | 113 | 1 | 0.9 |
| Armstrong (AM) | 12 | 0 | 0 |
| Silvan (SV) | 3 | 0 | 0 |
| Tarago (TAR) | 16 | 0 | 0 |
| Thompson (TH) | 8 | 0 | 0 |
| Total | 610 | 25 | 4.1 |
Seasonal prevalences of Enterocytozoon bieneusi in sambar deer in nine of Melbourne’s water catchments
| Season | Total no. of samples tested | No. of test-positive samples | Prevalence (%) |
|---|---|---|---|
| Spring | 130 | 8 | 6.2 |
| Summer | 97 | 2 | 2.1 |
| Autumn | 163 | 8 | 5.0 |
| Winter | 220 | 7 | 3.2 |
Annual prevalences of Enterocytozoon bieneusi in Sambar deer in nine of Melbourne’s water catchment areas
| Year | Total no. of samples tested | No. of test-positive samples | Prevalence (%) |
|---|---|---|---|
| 2009 | 57 | 1 | 1.8 |
| 2010 | 60 | 3 | 5.0 |
| 2011 | 67 | 1 | 1.5 |
| 2012 | 54 | 2 | 3.7 |
| 2013 | 67 | 2 | 3.0 |
| 2014 | 118 | 10 | 8.5 |
| 2015 | 67 | 2 | 3.0 |
| 2016 | 114 | 3 | 2.6 |
| 2017 | 6 | 1 | 16.7 |
Genotypes of Enterocytozoon bieneusi characterised by nested PCR-based sequencing of the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA from 25 individual faecal samples from sambar deer collected (in different seasons and years) from five of Melbourne’s water catchment areas
| Genotype designationa | GenBank ID | Sample code | Catchment area | Season | Year |
|---|---|---|---|---|---|
| D | MF693831 | C1508 | Cardinia | Spring | 2010 |
| D | MF693831 | UY1357 | Upper Yarra | Winter | 2010 |
| D | MF693831 | YY4416 | Yan Yean | Autumn | 2014 |
| J | MF693833 | OS5279 | O’Shannassay | Spring | 2014 |
| Type IV | MF693832 | OS1917 | O’Shannassay | Winter | 2011 |
| MWC_d1 * | MF496204 | C1505 | Cardinia | Spring | 2010 |
| MWC_d1 * | MF496204 | C4255 | Cardinia | Summer | 2014 |
| MWC_d1 * | MF496204 | C3645 | Cardinia | Winter | 2013 |
| MWC_d1 * | MF496204 | C4857 | Cardinia | Winter | 2014 |
| MWC_d1 * | MF496204 | MR7507 | Maroondah | Autumn | 2017 |
| MWC_d1 * | MF496204 | MR240 | Maroondah | Winter | 2009 |
| MWC_d1 * | MF496204 | OS4550 | O’Shannassay | Autumn | 2014 |
| MWC_d1 * | MF496204 | OS7320 | O’Shannassay | Spring | 2016 |
| MWC_d1 * | MF496204 | UY4661 | Upper Yarra | Autumn | 2014 |
| MWC_d1 * | MF496204 | UY4607 | Upper Yarra | Autumn | 2014 |
| MWC_d1 * | MF496204 | UY4646 | Upper Yarra | Autumn | 2014 |
| MWC_d1 * | MF496204 | UY4614 | Upper Yarra | Autumn | 2014 |
| MWC_d1 * | MF496204 | UY4624 | Upper Yarra | Autumn | 2014 |
| MWC_d1 * | MF496204 | UY4067 | Upper Yarra | Spring | 2013 |
| MWC_d1 * | MF496204 | UY6189 | Upper Yarra | Spring | 2015 |
| MWC_d1 * | MF496204 | UY6181 | Upper Yarra | Spring | 2015 |
| MWC_d1 * | MF496204 | UY6540 | Upper Yarra | Summer | 2016 |
| MWC_d1 * | MF496204 | UY2942 | Upper Yarra | Winter | 2012 |
| MWC_d1 * | MF496204 | UY6973 | Upper Yarra | Winter | 2016 |
| MWC_d2 * | MF496203 | C3263 | Cardinia | Spring | 2012 |
aNovel genotype is indicated with an asterisk
Fig. 1Relationships among genotypes of Enterocytozoon bieneusi recorded in sambar deer in this study inferred from phylogenetic analysis of sequence data for the internal transcribed spacer (ITS) of nuclear ribosomal DNA by Bayesian inference (BI). Sequences from a range of distinct E. bieneusi genotypes from published papers were included for comparison in the analysis (see Additional file 3: Table S3; [33, 48–50]). Statistically significant posterior probabilities (pp) are indicated on branches. Individual GenBank accession numbers precede genotype designation (in italics), followed by sample and locality descriptions. Enterocytozoon bieneusi genotypes identified and characterised from faecal DNA samples in the present study are indicated in bold-type. Clades were assigned group names based on the classification system established by Drosten et al. [51], with Group 1 being further subdivided into Subgroups 1a to 1 h. The scale-bar represents the number of substitutions per site. The E. bieneusi genotypes PtEbIX (DQ85585) and CD8 (KJ668735) from dogs were used as outgroups. An asterisk (*) indicates a novel genotype characterised in the present study