Literature DB >> 29290336

Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development.

Jonas B Nielsen1, Lars G Fritsche2, Wei Zhou3, Tanya M Teslovich4, Oddgeir L Holmen5, Stefan Gustafsson6, Maiken E Gabrielsen7, Ellen M Schmidt8, Robin Beaumont9, Brooke N Wolford1, Maoxuan Lin1, Chad M Brummett10, Michael H Preuss11, Lena Refsgaard12, Erwin P Bottinger13, Sarah E Graham14, Ida Surakka14, Yunhan Chu7, Anne Heidi Skogholt7, Håvard Dalen15, Alan P Boyle16, Hakan Oral14, Todd J Herron17, Jacob Kitzman18, José Jalife19, Jesper H Svendsen20, Morten S Olesen21, Inger Njølstad22, Maja-Lisa Løchen22, Aris Baras4, Omri Gottesman4, Anthony Marcketta4, Colm O'Dushlaine4, Marylyn D Ritchie23, Tom Wilsgaard22, Ruth J F Loos11, Timothy M Frayling9, Michael Boehnke24, Erik Ingelsson25, David J Carey23, Frederick E Dewey4, Hyun M Kang8, Gonçalo R Abecasis24, Kristian Hveem26, Cristen J Willer27.   

Abstract

Atrial fibrillation (AF) is a common cardiac arrhythmia and a major risk factor for stroke, heart failure, and premature death. The pathogenesis of AF remains poorly understood, which contributes to the current lack of highly effective treatments. To understand the genetic variation and biology underlying AF, we undertook a genome-wide association study (GWAS) of 6,337 AF individuals and 61,607 AF-free individuals from Norway, including replication in an additional 30,679 AF individuals and 278,895 AF-free individuals. Through genotyping and dense imputation mapping from whole-genome sequencing, we tested almost nine million genetic variants across the genome and identified seven risk loci, including two novel loci. One novel locus (lead single-nucleotide variant [SNV] rs12614435; p = 6.76 × 10-18) comprised intronic and several highly correlated missense variants situated in the I-, A-, and M-bands of titin, which is the largest protein in humans and responsible for the passive elasticity of heart and skeletal muscle. The other novel locus (lead SNV rs56202902; p = 1.54 × 10-11) covered a large, gene-dense chromosome 1 region that has previously been linked to cardiac conduction. Pathway and functional enrichment analyses suggested that many AF-associated genetic variants act through a mechanism of impaired muscle cell differentiation and tissue formation during fetal heart development.
Copyright © 2017 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CDKN2C; DMRTA2; GWAS; TTN; atrial fibrillation; cardiomyopathy; fetal; genetic risk score; heart; pathway

Mesh:

Year:  2017        PMID: 29290336      PMCID: PMC5777936          DOI: 10.1016/j.ajhg.2017.12.003

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  70 in total

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Journal:  Nature       Date:  2001-01-04       Impact factor: 49.962

2.  Cohort Profile: the HUNT Study, Norway.

Authors:  S Krokstad; A Langhammer; K Hveem; T L Holmen; K Midthjell; T R Stene; G Bratberg; J Heggland; J Holmen
Journal:  Int J Epidemiol       Date:  2012-08-09       Impact factor: 7.196

3.  Regression of electrocardiographic left ventricular hypertrophy and decreased incidence of new-onset atrial fibrillation in patients with hypertension.

Authors:  Peter M Okin; Kristian Wachtell; Richard B Devereux; Katherine E Harris; Sverker Jern; Sverre E Kjeldsen; Stevo Julius; Lars H Lindholm; Markku S Nieminen; Jonathan M Edelman; Darcy A Hille; Björn Dahlöf
Journal:  JAMA       Date:  2006-09-13       Impact factor: 56.272

4.  Meta-analysis identifies six new susceptibility loci for atrial fibrillation.

Authors:  Patrick T Ellinor; Kathryn L Lunetta; Christine M Albert; Nicole L Glazer; Marylyn D Ritchie; Albert V Smith; Dan E Arking; Martina Müller-Nurasyid; Bouwe P Krijthe; Steven A Lubitz; Joshua C Bis; Mina K Chung; Marcus Dörr; Kouichi Ozaki; Jason D Roberts; J Gustav Smith; Arne Pfeufer; Moritz F Sinner; Kurt Lohman; Jingzhong Ding; Nicholas L Smith; Jonathan D Smith; Michiel Rienstra; Kenneth M Rice; David R Van Wagoner; Jared W Magnani; Reza Wakili; Sebastian Clauss; Jerome I Rotter; Gerhard Steinbeck; Lenore J Launer; Robert W Davies; Matthew Borkovich; Tamara B Harris; Honghuang Lin; Uwe Völker; Henry Völzke; David J Milan; Albert Hofman; Eric Boerwinkle; Lin Y Chen; Elsayed Z Soliman; Benjamin F Voight; Guo Li; Aravinda Chakravarti; Michiaki Kubo; Usha B Tedrow; Lynda M Rose; Paul M Ridker; David Conen; Tatsuhiko Tsunoda; Tetsushi Furukawa; Nona Sotoodehnia; Siyan Xu; Naoyuki Kamatani; Daniel Levy; Yusuke Nakamura; Babar Parvez; Saagar Mahida; Karen L Furie; Jonathan Rosand; Raafia Muhammad; Bruce M Psaty; Thomas Meitinger; Siegfried Perz; H-Erich Wichmann; Jacqueline C M Witteman; W H Linda Kao; Sekar Kathiresan; Dan M Roden; Andre G Uitterlinden; Fernando Rivadeneira; Barbara McKnight; Marketa Sjögren; Anne B Newman; Yongmei Liu; Michael H Gollob; Olle Melander; Toshihiro Tanaka; Bruno H Ch Stricker; Stephan B Felix; Alvaro Alonso; Dawood Darbar; John Barnard; Daniel I Chasman; Susan R Heckbert; Emelia J Benjamin; Vilmundur Gudnason; Stefan Kääb
Journal:  Nat Genet       Date:  2012-04-29       Impact factor: 38.330

5.  Atrial Remodeling and Atrial Tachyarrhythmias in Arrhythmogenic Right Ventricular Cardiomyopathy.

Authors:  Lingmin Wu; Jinrui Guo; Lihui Zheng; Gang Chen; Ligang Ding; Yu Qiao; Wei Sun; Yan Yao; Shu Zhang
Journal:  Am J Cardiol       Date:  2016-06-14       Impact factor: 2.778

6.  Familial aggregation of atrial fibrillation: a study in Danish twins.

Authors:  Ingrid Elisabeth Christophersen; Lasse Steen Ravn; Esben Budtz-Joergensen; Axel Skytthe; Stig Haunsoe; Jesper Hastrup Svendsen; Kaare Christensen
Journal:  Circ Arrhythm Electrophysiol       Date:  2009-04-23

7.  Growth suppression by p18, a p16INK4/MTS1- and p14INK4B/MTS2-related CDK6 inhibitor, correlates with wild-type pRb function.

Authors:  K L Guan; C W Jenkins; Y Li; M A Nichols; X Wu; C L O'Keefe; A G Matera; Y Xiong
Journal:  Genes Dev       Date:  1994-12-15       Impact factor: 11.361

8.  KEGG for integration and interpretation of large-scale molecular data sets.

Authors:  Minoru Kanehisa; Susumu Goto; Yoko Sato; Miho Furumichi; Mao Tanabe
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

9.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

10.  Pitx2c patterns anterior myocardium and aortic arch vessels and is required for local cell movement into atrioventricular cushions.

Authors:  Chengyu Liu; Wei Liu; Jennifer Palie; Mei Fang Lu; Nigel A Brown; James F Martin
Journal:  Development       Date:  2002-11       Impact factor: 6.868

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  31 in total

Review 1.  Genetics of Atrial Fibrillation in 2020: GWAS, Genome Sequencing, Polygenic Risk, and Beyond.

Authors:  Carolina Roselli; Michiel Rienstra; Patrick T Ellinor
Journal:  Circ Res       Date:  2020-06-18       Impact factor: 17.367

2.  Differentially expressed genes for atrial fibrillation identified by RNA sequencing from paired human left and right atrial appendages.

Authors:  Alison M Thomas; Claudia P Cabrera; Malcolm Finlay; Kulvinder Lall; Muriel Nobles; Richard J Schilling; Kristie Wood; Charles A Mein; Michael R Barnes; Patricia B Munroe; Andrew Tinker
Journal:  Physiol Genomics       Date:  2019-06-07       Impact factor: 3.107

Review 3.  Electronic health records: the next wave of complex disease genetics.

Authors:  Brooke N Wolford; Cristen J Willer; Ida Surakka
Journal:  Hum Mol Genet       Date:  2018-05-01       Impact factor: 6.150

4.  Genetic basis and molecular biology of cardiac arrhythmias in cardiomyopathies.

Authors:  Ali J Marian; Babken Asatryan; Xander H T Wehrens
Journal:  Cardiovasc Res       Date:  2020-07-15       Impact factor: 10.787

Review 5.  Mechanisms and Drug Development in Atrial Fibrillation.

Authors:  David Calvo; David Filgueiras-Rama; José Jalife
Journal:  Pharmacol Rev       Date:  2018-07       Impact factor: 25.468

6.  Integrative Omics Approach to Identifying Genes Associated With Atrial Fibrillation.

Authors:  Biqi Wang; Kathryn L Lunetta; Josée Dupuis; Steven A Lubitz; Ludovic Trinquart; Lixia Yao; Patrick T Ellinor; Emelia J Benjamin; Honghuang Lin
Journal:  Circ Res       Date:  2019-12-05       Impact factor: 17.367

7.  Genomics-First Evaluation of Heart Disease Associated With Titin-Truncating Variants.

Authors:  Christopher M Haggerty; Scott M Damrauer; Michael G Levin; David Birtwell; David J Carey; Alicia M Golden; Dustin N Hartzel; Yirui Hu; Renae Judy; Melissa A Kelly; Rachel L Kember; H Lester Kirchner; Joseph B Leader; Lusha Liang; Chris McDermott-Roe; Apoorva Babu; Michael Morley; Zachariah Nealy; Thomas N Person; Arichanah Pulenthiran; Aeron Small; Diane T Smelser; Richard C Stahl; Amy C Sturm; Heather Williams; Aris Baras; Kenneth B Margulies; Thomas P Cappola; Frederick E Dewey; Anurag Verma; Xinyuang Zhang; Adolfo Correa; Michael E Hall; James G Wilson; Marylyn D Ritchie; Daniel J Rader; Michael F Murray; Brandon K Fornwalt; Zoltan Arany
Journal:  Circulation       Date:  2019-06-20       Impact factor: 29.690

8.  Epigenomic and Transcriptomic Dynamics During Human Heart Organogenesis.

Authors:  Jennifer VanOudenhove; Tara N Yankee; Andrea Wilderman; Justin Cotney
Journal:  Circ Res       Date:  2020-08-09       Impact factor: 17.367

9.  Thyroid Function Affects the Risk of Stroke via Atrial Fibrillation: A Mendelian Randomization Study.

Authors:  Eirini Marouli; Aleksander Kus; Fabiola Del Greco M; Layal Chaker; Robin Peeters; Alexander Teumer; Panos Deloukas; Marco Medici
Journal:  J Clin Endocrinol Metab       Date:  2020-08-01       Impact factor: 5.958

10.  Association Between Titin Loss-of-Function Variants and Early-Onset Atrial Fibrillation.

Authors:  Seung Hoan Choi; Lu-Chen Weng; Carolina Roselli; Honghuang Lin; Christopher M Haggerty; M Benjamin Shoemaker; John Barnard; Dan E Arking; Daniel I Chasman; Christine M Albert; Mark Chaffin; Nathan R Tucker; Jonathan D Smith; Namrata Gupta; Stacey Gabriel; Lauren Margolin; Marisa A Shea; Christian M Shaffer; Zachary T Yoneda; Eric Boerwinkle; Nicholas L Smith; Edwin K Silverman; Susan Redline; Ramachandran S Vasan; Esteban G Burchard; Stephanie M Gogarten; Cecelia Laurie; Thomas W Blackwell; Gonçalo Abecasis; David J Carey; Brandon K Fornwalt; Diane T Smelser; Aris Baras; Frederick E Dewey; Cashell E Jaquish; George J Papanicolaou; Nona Sotoodehnia; David R Van Wagoner; Bruce M Psaty; Sekar Kathiresan; Dawood Darbar; Alvaro Alonso; Susan R Heckbert; Mina K Chung; Dan M Roden; Emelia J Benjamin; Michael F Murray; Kathryn L Lunetta; Steven A Lubitz; Patrick T Ellinor
Journal:  JAMA       Date:  2018-12-11       Impact factor: 56.272

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