Literature DB >> 29289458

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.

Archa H Fox1, Shinichi Nakagawa2, Tetsuro Hirose3, Charles S Bond4.   

Abstract

Long noncoding RNA (lncRNA) molecules are some of the newest and least understood players in gene regulation. Hence, we need good model systems with well-defined RNA and protein components. One such system is paraspeckles - protein-rich nuclear organelles built around a specific lncRNA scaffold. New discoveries show how paraspeckles are formed through multiple RNA-protein and protein-protein interactions, some of which involve extensive polymerization, and others with multivalent interactions driving phase separation. Once formed, paraspeckles influence gene regulation through sequestration of component proteins and RNAs, with subsequent depletion in other compartments. Here we focus on the dual aspects of paraspeckle structure and function, revealing an emerging role for these dynamic bodies in a multitude of cellular settings.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  RNA–protein interactions; gene regulation; long noncoding RNA; membraneless organelles; paraspeckles

Mesh:

Substances:

Year:  2017        PMID: 29289458     DOI: 10.1016/j.tibs.2017.12.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  111 in total

Review 1.  Invited Review: Long non-coding RNAs: important regulators in the development, function and disorders of the central nervous system.

Authors:  R Cuevas-Diaz Duran; H Wei; D H Kim; J Q Wu
Journal:  Neuropathol Appl Neurobiol       Date:  2019-03-04       Impact factor: 8.090

2.  Long non-coding RNA NEAT1 shows high expression unrelated to molecular features and clinical outcome in multiple myeloma.

Authors:  Elisa Taiana; Domenica Ronchetti; Vanessa Favasuli; Katia Todoerti; Martina Manzoni; Nicola Amodio; Pierfrancesco Tassone; Luca Agnelli; Antonino Neri
Journal:  Haematologica       Date:  2018-09-13       Impact factor: 9.941

Review 3.  lncRedibly versatile: biochemical and biological functions of long noncoding RNAs.

Authors:  Emily J Shields; Ana F Petracovici; Roberto Bonasio
Journal:  Biochem J       Date:  2019-04-10       Impact factor: 3.857

Review 4.  Non-coding RNAs in chromatin folding and nuclear organization.

Authors:  Sergey V Razin; Alexey A Gavrilov
Journal:  Cell Mol Life Sci       Date:  2021-06-11       Impact factor: 9.261

Review 5.  Emerging Roles for Phase Separation in Plants.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Dev Cell       Date:  2020-10-12       Impact factor: 12.270

Review 6.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

Review 7.  Protein phase separation: A novel therapy for cancer?

Authors:  Wei Wang; Yingqian Chen; Aixiao Xu; Minyi Cai; Ji Cao; Hong Zhu; Bo Yang; Xuejing Shao; Meidan Ying; Qiaojun He
Journal:  Br J Pharmacol       Date:  2020-09-28       Impact factor: 8.739

Review 8.  Probing the function of long noncoding RNAs in the nucleus.

Authors:  Sajal Medha K Akkipeddi; Anthony J Velleca; Dawn M Carone
Journal:  Chromosome Res       Date:  2020-02-06       Impact factor: 5.239

9.  HIV-1 replication in CD4+ T cells exploits the down-regulation of antiviral NEAT1 long non-coding RNAs following T cell activation.

Authors:  Hongbing Liu; Pei-Wen Hu; Jacob Couturier; Dorothy E Lewis; Andrew P Rice
Journal:  Virology       Date:  2018-07-20       Impact factor: 3.616

Review 10.  The Role of RNA in Biological Phase Separations.

Authors:  Marta M Fay; Paul J Anderson
Journal:  J Mol Biol       Date:  2018-05-10       Impact factor: 5.469

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