Literature DB >> 30971458

lncRedibly versatile: biochemical and biological functions of long noncoding RNAs.

Emily J Shields1,2, Ana F Petracovici1,3, Roberto Bonasio4,5.   

Abstract

Long noncoding RNAs (lncRNAs) are transcripts that do not code for proteins, but nevertheless exert regulatory effects on various biochemical pathways, in part via interactions with proteins, DNA, and other RNAs. LncRNAs are thought to regulate transcription and other biological processes by acting, for example, as guides that target proteins to chromatin, scaffolds that facilitate protein-protein interactions and complex formation, and orchestrators of phase-separated compartments. The study of lncRNAs has reached an exciting time, as recent advances in experimental and computational methods allow for genome-wide interrogation of biochemical and biological mechanisms of these enigmatic transcripts. A better appreciation for the biochemical versatility of lncRNAs has allowed us to begin closing gaps in our knowledge of how they act in diverse cellular and organismal contexts, including development and disease.
© 2019 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Entities:  

Keywords:  RNA-binding proteins; chromatin; epigenetics; gene expression and regulation; large intervening noncoding RNA

Mesh:

Substances:

Year:  2019        PMID: 30971458      PMCID: PMC6745715          DOI: 10.1042/BCJ20180440

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  224 in total

1.  Combined RNAi and localization for functionally dissecting long noncoding RNAs.

Authors:  Debojyoti Chakraborty; Dennis Kappei; Mirko Theis; Anja Nitzsche; Li Ding; Maciej Paszkowski-Rogacz; Vineeth Surendranath; Nicolas Berger; Herbert Schulz; Kathrin Saar; Norbert Hubner; Frank Buchholz
Journal:  Nat Methods       Date:  2012-02-12       Impact factor: 28.547

Review 2.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

3.  An Engineered orco Mutation Produces Aberrant Social Behavior and Defective Neural Development in Ants.

Authors:  Hua Yan; Comzit Opachaloemphan; Giacomo Mancini; Huan Yang; Matthew Gallitto; Jakub Mlejnek; Alexandra Leibholz; Kevin Haight; Majid Ghaninia; Lucy Huo; Michael Perry; Jesse Slone; Xiaofan Zhou; Maria Traficante; Clint A Penick; Kelly Dolezal; Kaustubh Gokhale; Kelsey Stevens; Ingrid Fetter-Pruneda; Roberto Bonasio; Laurence J Zwiebel; Shelley L Berger; Jürgen Liebig; Danny Reinberg; Claude Desplan
Journal:  Cell       Date:  2017-08-10       Impact factor: 41.582

4.  The NORAD lncRNA assembles a topoisomerase complex critical for genome stability.

Authors:  Mathias Munschauer; Celina T Nguyen; Klara Sirokman; Christina R Hartigan; Larson Hogstrom; Jesse M Engreitz; Jacob C Ulirsch; Charles P Fulco; Vidya Subramanian; Jenny Chen; Monica Schenone; Mitchell Guttman; Steven A Carr; Eric S Lander
Journal:  Nature       Date:  2018-08-27       Impact factor: 49.962

5.  Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing.

Authors:  Chun-Kan Chen; Mario Blanco; Constanza Jackson; Erik Aznauryan; Noah Ollikainen; Christine Surka; Amy Chow; Andrea Cerase; Patrick McDonel; Mitchell Guttman
Journal:  Science       Date:  2016-08-04       Impact factor: 47.728

6.  Targeted disruption of Hotair leads to homeotic transformation and gene derepression.

Authors:  Lingjie Li; Bo Liu; Orly L Wapinski; Miao-Chih Tsai; Kun Qu; Jiajing Zhang; Jeff C Carlson; Meihong Lin; Fengqin Fang; Rajnish A Gupta; Jill A Helms; Howard Y Chang
Journal:  Cell Rep       Date:  2013-09-26       Impact factor: 9.423

7.  Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

Authors:  Hyun-Woo Rhee; Peng Zou; Namrata D Udeshi; Jeffrey D Martell; Vamsi K Mootha; Steven A Carr; Alice Y Ting
Journal:  Science       Date:  2013-01-31       Impact factor: 47.728

8.  A long noncoding RNA associated with susceptibility to celiac disease.

Authors:  Ainara Castellanos-Rubio; Nora Fernandez-Jimenez; Radomir Kratchmarov; Xiaobing Luo; Govind Bhagat; Peter H R Green; Robert Schneider; Megerditch Kiledjian; Jose Ramon Bilbao; Sankar Ghosh
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728

9.  GoldCLIP: Gel-omitted Ligation-dependent CLIP.

Authors:  Jiaqi Gu; Ming Wang; Yang Yang; Ding Qiu; Yiqun Zhang; Jinbiao Ma; Yu Zhou; Gregory J Hannon; Yang Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-04-28       Impact factor: 7.691

10.  Widespread RNA binding by chromatin-associated proteins.

Authors:  David G Hendrickson; David R Kelley; Danielle Tenen; Bradley Bernstein; John L Rinn
Journal:  Genome Biol       Date:  2016-02-16       Impact factor: 13.583

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  12 in total

1.  LncRNA LINC00511 promotes COL1A1-mediated proliferation and metastasis by sponging miR-126-5p/miR-218-5p in lung adenocarcinoma.

Authors:  Yudong Wang; Xingke Mei; Weikang Song; Chen Wang; Xueshan Qiu
Journal:  BMC Pulm Med       Date:  2022-07-16       Impact factor: 3.320

2.  Systematic analysis of long intergenic non-coding RNAs in C. elegans germline uncovers roles in somatic growth.

Authors:  Hasan Ishtayeh; Hanna Achache; Eitan Kroizer; Yisrael Rappaport; Eyal Itskovits; Hila Gingold; Corinne Best; Oded Rechavi; Yonatan B Tzur
Journal:  RNA Biol       Date:  2020-09-05       Impact factor: 4.652

3.  Knockdown of lncRNA HAGLROS inhibits metastasis and promotes apoptosis in nephroblastoma cells by inhibition of autophagy.

Authors:  Pugui Li; Kun Zhang; Shijie Tang; Weizhu Tang
Journal:  Bioengineered       Date:  2022-03       Impact factor: 6.832

4.  Identification of clinical trait-related lncRNA and mRNA biomarkers with weighted gene co-expression network analysis as useful tool for personalized medicine in ovarian cancer.

Authors:  Na Li; Xianquan Zhan
Journal:  EPMA J       Date:  2019-07-19       Impact factor: 6.543

Review 5.  TGF-β-Mediated Epithelial-Mesenchymal Transition and Cancer Metastasis.

Authors:  Yang Hao; David Baker; Peter Ten Dijke
Journal:  Int J Mol Sci       Date:  2019-06-05       Impact factor: 5.923

Review 6.  Long Non-Coding RNAs (lncRNAs) in Cardiovascular Disease Complication of Type 2 Diabetes.

Authors:  Nurruzanna Ismail; Noraidatulakma Abdullah; Nor Azian Abdul Murad; Rahman Jamal; Siti Aishah Sulaiman
Journal:  Diagnostics (Basel)       Date:  2021-01-19

7.  lncRNA SOX2-OT regulates laryngeal cancer cell proliferation, migration and invasion and induces apoptosis by suppressing miR-654.

Authors:  Guang Li; Chunchen Pan; Jiaqiang Sun; Guanglun Wan; Jingwu Sun
Journal:  Exp Ther Med       Date:  2020-03-06       Impact factor: 2.447

8.  Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function.

Authors:  Wenqing Ren; Nicole Medeiros; Robert Warneford-Thomson; Phillip Wulfridge; Qingqing Yan; Joyce Bian; Simone Sidoli; Benjamin A Garcia; Emmanuel Skordalakes; Eric Joyce; Roberto Bonasio; Kavitha Sarma
Journal:  Nat Commun       Date:  2020-05-06       Impact factor: 14.919

9.  LncRNA GMDS-AS1 inhibits lung adenocarcinoma development by regulating miR-96-5p/CYLD signaling.

Authors:  Ming Zhao; Xiao-Feng Xin; Jian-Ya Zhang; Wei Dai; Tang-Feng Lv; Yong Song
Journal:  Cancer Med       Date:  2019-12-20       Impact factor: 4.452

10.  LncRNA KCNQ1OT1 promotes cell proliferation, migration and invasion via regulating miR-129-5p/JAG1 axis in non-small cell lung cancer.

Authors:  Yan Wang; Lei Zhang; Jiasheng Yang; Ruilin Sun
Journal:  Cancer Cell Int       Date:  2020-05-01       Impact factor: 5.722

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