Literature DB >> 29286490

A Facile Protocol to Generate Site-Specifically Acetylated Proteins in Escherichia Coli.

Sumana Venkat1, Caroline Gregory2, Kexin Meng3, Qinglei Gan4, Chenguang Fan5.   

Abstract

Post-translational modifications that occur at specific positions of proteins have been shown to play important roles in a variety of cellular processes. Among them, reversible lysine acetylation is one of the most widely distributed in all domains of life. Although numerous mass spectrometry-based acetylome studies have been performed, further characterization of these putative acetylation targets has been limited. One possible reason is that it is difficult to generate purely acetylated proteins at desired positions by most classic biochemical approaches. To overcome this challenge, the genetic code expansion technique has been applied to use the pair of an engineered pyrrolysyl-tRNA synthetase variant, and its cognate tRNA from Methanosarcinaceae species, to direct the cotranslational incorporation of acetyllysine at the specific site in the protein of interest. After first application in the study of histone acetylation, this approach has facilitated acetylation studies on a variety of proteins. In this work, we demonstrated a facile protocol to produce site-specifically acetylated proteins by using the model bacterium Escherichia coli as the host. Malate dehydrogenase was used as a demonstration example in this work.

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Year:  2017        PMID: 29286490      PMCID: PMC5755542          DOI: 10.3791/57061

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  43 in total

1.  Chemical biology: dressed-up proteins.

Authors:  Gijsbert Grotenbreg; Hidde Ploegh
Journal:  Nature       Date:  2007-04-26       Impact factor: 49.962

Review 2.  50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond.

Authors:  Eric Verdin; Melanie Ott
Journal:  Nat Rev Mol Cell Biol       Date:  2014-12-30       Impact factor: 94.444

Review 3.  Pyrrolysyl-tRNA synthetase: an ordinary enzyme but an outstanding genetic code expansion tool.

Authors:  Wei Wan; Jeffery M Tharp; Wenshe R Liu
Journal:  Biochim Biophys Acta       Date:  2014-03-12

Review 4.  Regulation of bacterial physiology by lysine acetylation of proteins.

Authors:  Vicente Bernal; Sara Castaño-Cerezo; Julia Gallego-Jara; Ana Écija-Conesa; Teresa de Diego; José Luis Iborra; Manuel Cánovas
Journal:  N Biotechnol       Date:  2014-03-15       Impact factor: 5.079

Review 5.  Acetylation control of cardiac fatty acid β-oxidation and energy metabolism in obesity, diabetes, and heart failure.

Authors:  Arata Fukushima; Gary D Lopaschuk
Journal:  Biochim Biophys Acta       Date:  2016-07-29

Review 6.  Lysine acetylation: enzymes, bromodomains and links to different diseases.

Authors:  Linya You; Jianyun Nie; Wei-Jian Sun; Zhi-Qiang Zheng; Xiang-Jiao Yang
Journal:  Essays Biochem       Date:  2012       Impact factor: 8.000

7.  A convenient method for genetic incorporation of multiple noncanonical amino acids into one protein in Escherichia coli.

Authors:  Ying Huang; William K Russell; Wei Wan; Pei-Jing Pai; David H Russell; Wenshe Liu
Journal:  Mol Biosyst       Date:  2010-02-15

8.  Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis.

Authors:  Ivan V Gregoretti; Yun-Mi Lee; Holly V Goodson
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

9.  Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database.

Authors:  George A Khoury; Richard C Baliban; Christodoulos A Floudas
Journal:  Sci Rep       Date:  2011-09-13       Impact factor: 4.379

Review 10.  Lysine Acetylation and Deacetylation in Brain Development and Neuropathies.

Authors:  Alicia Tapias; Zhao-Qi Wang
Journal:  Genomics Proteomics Bioinformatics       Date:  2017-02-02       Impact factor: 7.691

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  4 in total

1.  Characterizing Lysine Acetylation of Isocitrate Dehydrogenase in Escherichia coli.

Authors:  Sumana Venkat; Hao Chen; Alleigh Stahman; Denver Hudson; Paige McGuire; Qinglei Gan; Chenguang Fan
Journal:  J Mol Biol       Date:  2018-05-04       Impact factor: 5.469

2.  Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously.

Authors:  Sumana Venkat; Jourdan Sturges; Alleigh Stahman; Caroline Gregory; Qinglei Gan; Chenguang Fan
Journal:  ACS Synth Biol       Date:  2018-01-17       Impact factor: 5.110

Review 3.  Recent Development of Genetic Code Expansion for Posttranslational Modification Studies.

Authors:  Hao Chen; Sumana Venkat; Paige McGuire; Qinglei Gan; Chenguang Fan
Journal:  Molecules       Date:  2018-07-08       Impact factor: 4.411

4.  Studying Acetylation of Aconitase Isozymes by Genetic Code Expansion.

Authors:  Jessica Araujo; Sara Ottinger; Sumana Venkat; Qinglei Gan; Chenguang Fan
Journal:  Front Chem       Date:  2022-03-24       Impact factor: 5.221

  4 in total

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