Literature DB >> 29283553

Mechanism of N2 Reduction Catalyzed by Fe-Nitrogenase Involves Reductive Elimination of H2.

Derek F Harris1, Dmitriy A Lukoyanov2, Sudipta Shaw1, Phil Compton2, Monika Tokmina-Lukaszewska3, Brian Bothner3, Neil Kelleher2, Dennis R Dean4, Brian M Hoffman2, Lance C Seefeldt1.   

Abstract

Of the three forms of nitrogenase (Mo-nitrogenase, V-nitrogenase, and Fe-nitrogenase), Fe-nitrogenase has the poorest ratio of N2 reduction relative to H2 evolution. Recent work on the Mo-nitrogenase has revealed that reductive elimination of two bridging Fe-H-Fe hydrides on the active site FeMo-cofactor to yield H2 is a key feature in the N2 reduction mechanism. The N2 reduction mechanism for the Fe-nitrogenase active site FeFe-cofactor was unknown. Here, we have purified both component proteins of the Fe-nitrogenase system, the electron-delivery Fe protein (AnfH) plus the catalytic FeFe protein (AnfDGK), and established its mechanism of N2 reduction. Inductively coupled plasma optical emission spectroscopy and mass spectrometry show that the FeFe protein component does not contain significant amounts of Mo or V, thus ruling out a requirement of these metals for N2 reduction. The fully functioning Fe-nitrogenase system was found to have specific activities for N2 reduction (1 atm) of 181 ± 5 nmol NH3 min-1 mg-1 FeFe protein, for proton reduction (in the absence of N2) of 1085 ± 41 nmol H2 min-1 mg-1 FeFe protein, and for acetylene reduction (0.3 atm) of 306 ± 3 nmol C2H4 min-1 mg-1 FeFe protein. Under turnover conditions, N2 reduction is inhibited by H2 and the enzyme catalyzes the formation of HD when presented with N2 and D2. These observations are explained by the accumulation of four reducing equivalents as two metal-bound hydrides and two protons at the FeFe-cofactor, with activation for N2 reduction occurring by reductive elimination of H2.

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Year:  2018        PMID: 29283553      PMCID: PMC5837051          DOI: 10.1021/acs.biochem.7b01142

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  52 in total

1.  Mechanism of Molybdenum Nitrogenase.

Authors:  Barbara K. Burgess; David J. Lowe
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Interactions among substrates and inhibitors of nitrogenase.

Authors:  J M Rivera-Ortiz; R H Burris
Journal:  J Bacteriol       Date:  1975-08       Impact factor: 3.490

3.  The vanadium nitrogenase of Azotobacter chroococcum. Purification and properties of the VFe protein.

Authors:  R R Eady; R L Robson; T H Richardson; R W Miller; M Hawkins
Journal:  Biochem J       Date:  1987-05-15       Impact factor: 3.857

4.  Isolation of a new vanadium-containing nitrogenase from Azotobacter vinelandii.

Authors:  B J Hales; E E Case; J E Morningstar; M F Dzeda; L A Mauterer
Journal:  Biochemistry       Date:  1986-11-18       Impact factor: 3.162

5.  Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes.

Authors:  João C Setubal; Patricia dos Santos; Barry S Goldman; Helga Ertesvåg; Guadelupe Espin; Luis M Rubio; Svein Valla; Nalvo F Almeida; Divya Balasubramanian; Lindsey Cromes; Leonardo Curatti; Zijin Du; Eric Godsy; Brad Goodner; Kaitlyn Hellner-Burris; José A Hernandez; Katherine Houmiel; Juan Imperial; Christina Kennedy; Timothy J Larson; Phil Latreille; Lauren S Ligon; Jing Lu; Mali Maerk; Nancy M Miller; Stacie Norton; Ina P O'Carroll; Ian Paulsen; Estella C Raulfs; Rebecca Roemer; James Rosser; Daniel Segura; Steve Slater; Shawn L Stricklin; David J Studholme; Jian Sun; Carlos J Viana; Erik Wallin; Baomin Wang; Cathy Wheeler; Huijun Zhu; Dennis R Dean; Ray Dixon; Derek Wood
Journal:  J Bacteriol       Date:  2009-05-08       Impact factor: 3.490

6.  Substrate interaction at an iron-sulfur face of the FeMo-cofactor during nitrogenase catalysis.

Authors:  Brett M Barney; Robert Y Igarashi; Patricia C Dos Santos; Dennis R Dean; Lance C Seefeldt
Journal:  J Biol Chem       Date:  2004-10-01       Impact factor: 5.157

7.  Nitrogen fixation in molybdenum-deficient continuous culture by a strain of Azotobacter vinelandii carrying a deletion of the structural genes for nitrogenase (nifHDK).

Authors:  P E Bishop; M E Hawkins; R R Eady
Journal:  Biochem J       Date:  1986-09-01       Impact factor: 3.857

8.  Activity, reconstitution, and accumulation of nitrogenase components in Azotobacter vinelandii mutant strains containing defined deletions within the nitrogenase structural gene cluster.

Authors:  A C Robinson; B K Burgess; D R Dean
Journal:  J Bacteriol       Date:  1986-04       Impact factor: 3.490

9.  The structure of vanadium nitrogenase reveals an unusual bridging ligand.

Authors:  Daniel Sippel; Oliver Einsle
Journal:  Nat Chem Biol       Date:  2017-07-10       Impact factor: 15.040

10.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

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  21 in total

Review 1.  Catalytic N2-to-NH3 (or -N2H4) Conversion by Well-Defined Molecular Coordination Complexes.

Authors:  Matthew J Chalkley; Marcus W Drover; Jonas C Peters
Journal:  Chem Rev       Date:  2020-04-30       Impact factor: 60.622

2.  Energy Transduction in Nitrogenase.

Authors:  Lance C Seefeldt; Brian M Hoffman; John W Peters; Simone Raugei; David N Beratan; Edwin Antony; Dennis R Dean
Journal:  Acc Chem Res       Date:  2018-08-10       Impact factor: 22.384

Review 3.  Reduction of Substrates by Nitrogenases.

Authors:  Lance C Seefeldt; Zhi-Yong Yang; Dmitriy A Lukoyanov; Derek F Harris; Dennis R Dean; Simone Raugei; Brian M Hoffman
Journal:  Chem Rev       Date:  2020-03-16       Impact factor: 60.622

Review 4.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 5.  Electron Transfer in Nitrogenase.

Authors:  Hannah L Rutledge; F Akif Tezcan
Journal:  Chem Rev       Date:  2020-01-30       Impact factor: 60.622

6.  Rnf and Fix Have Specific Roles during Aerobic Nitrogen Fixation in Azotobacter vinelandii.

Authors:  Alexander B Alleman; Amaya Garcia Costas; Florence Mus; John W Peters
Journal:  Appl Environ Microbiol       Date:  2022-08-24       Impact factor: 5.005

7.  Kinetic Understanding of N2 Reduction versus H2 Evolution at the E4(4H) Janus State in the Three Nitrogenases.

Authors:  Derek F Harris; Zhi-Yong Yang; Dennis R Dean; Lance C Seefeldt; Brian M Hoffman
Journal:  Biochemistry       Date:  2018-09-19       Impact factor: 3.162

Review 8.  The Spectroscopy of Nitrogenases.

Authors:  Casey Van Stappen; Laure Decamps; George E Cutsail; Ragnar Bjornsson; Justin T Henthorn; James A Birrell; Serena DeBeer
Journal:  Chem Rev       Date:  2020-04-02       Impact factor: 60.622

9.  Expression, Isolation, and Characterization of Vanadium Nitrogenase from Azotobacter vinelandii.

Authors:  Katharina Parison; Jakob Gies-Elterlein; Christian Trncik; Oliver Einsle
Journal:  Methods Mol Biol       Date:  2021

10.  Two ligand-binding sites in CO-reducing V nitrogenase reveal a general mechanistic principle.

Authors:  Michael Rohde; Konstantin Laun; Ingo Zebger; Sven T Stripp; Oliver Einsle
Journal:  Sci Adv       Date:  2021-05-28       Impact factor: 14.136

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