Literature DB >> 2928107

Definitions and nomenclature of nucleic acid structure components.

R E Dickerson1.   

Abstract

We report here recommendations for the definitions and nomenclature of nucleic acid structure parameters. These recommendations result from discussions at an EMBO Workshop on DNA Curvature and Bending held at Churchill College, Cambridge, in September 1988.

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Year:  1989        PMID： 2928107      PMCID： PMC317523          DOI： 10.1093/nar/17.5.1797

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  4 in total

1.  The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids.

Authors:  R Lavery; H Sklenar
Journal:  J Biomol Struct Dyn       Date:  1988-08

2.  Molecular mechanics calculations of dA12.dT12 and of the curved molecule d(GCTCGAAAAA)4.d(TTTTTCGAGC)4.

Authors:  E von Kitzing; S Diekmann
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

3.  A general procedure for generation of curved DNA molecules.

Authors:  D Bhattacharya; M Bansal
Journal:  J Biomol Struct Dyn       Date:  1988-08

4.  Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.

Authors:  A V Fratini; M L Kopka; H R Drew; R E Dickerson
Journal:  J Biol Chem       Date:  1982-12-25       Impact factor: 5.157
  4 in total
  44 in total

1.  Molecular flip-flops formed by overlapping Fis sites.

Authors:  Paul N Hengen; Ilya G Lyakhov; Lisa E Stewart; Thomas D Schneider
Journal:  Nucleic Acids Res       Date:  2003-11-15       Impact factor: 16.971

2.  Effect of DNA superhelicity and bound proteins on mechanistic aspects of the Hin-mediated and Fis-enhanced inversion.

Authors:  Jing Huang; Qing Zhang; Tamar Schlick
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

3.  Evaluation of DNA Force Fields in Implicit Solvation.

Authors:  Thomas Gaillard; David A Case
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

4.  Impact of static and dynamic A-form heterogeneity on the determination of RNA global structural dynamics using NMR residual dipolar couplings.

Authors:  Catherine Musselman; Stephen W Pitt; Kush Gulati; Lesley L Foster; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  J Biomol NMR       Date:  2006-11-01       Impact factor: 2.835

5.  Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations.

Authors:  Sam Meyer; Daniel Jost; Nikos Theodorakopoulos; Michel Peyrard; Richard Lavery; Ralf Everaers
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

Review 6.  Molecular modeling of nucleic acid structure.

Authors:  T E Cheatham; B R Brooks; P A Kollman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2001-11

7.  Geometry of the nucleosomal DNA superhelix.

Authors:  Thomas C Bishop
Journal:  Biophys J       Date:  2008-04-18       Impact factor: 4.033

8.  Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition.

Authors:  L W Tari; A S Secco
Journal:  Nucleic Acids Res       Date:  1995-06-11       Impact factor: 16.971

9.  DNA bending: the prevalence of kinkiness and the virtues of normality.

Authors:  R E Dickerson
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

10.  Conformational analysis of nucleic acids revisited: Curves+.

Authors:  R Lavery; M Moakher; J H Maddocks; D Petkeviciute; K Zakrzewska
Journal:  Nucleic Acids Res       Date:  2009-07-22       Impact factor: 16.971
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