Literature DB >> 29266930

Characterizing Hydration Properties Based on the Orientational Structure of Interfacial Water Molecules.

Sucheol Shin1, Adam P Willard1.   

Abstract

In this work, we present a general computational method for characterizing the molecular structure of liquid water interfaces as sampled from atomistic simulations. With this method, the interfacial structure is quantified based on the statistical analysis of the orientational configurations of interfacial water molecules. The method can be applied to generate position dependent maps of the hydration properties of heterogeneous surfaces. We present an application to the characterization of surface hydrophobicity, which we use to analyze simulations of a hydrated protein. We demonstrate that this approach is capable of revealing microscopic details of the collective dynamics of a protein hydration shell.

Entities:  

Year:  2018        PMID: 29266930     DOI: 10.1021/acs.jctc.7b00898

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

1.  Computational discovery of chemically patterned surfaces that effect unique hydration water dynamics.

Authors:  Jacob I Monroe; M Scott Shell
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

2.  The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS.

Authors:  Jonas Ahlers; Ellen M Adams; Verian Bader; Simone Pezzotti; Konstanze F Winklhofer; Jörg Tatzelt; Martina Havenith
Journal:  Biophys J       Date:  2021-01-28       Impact factor: 4.033

3.  A generalized deep learning approach for local structure identification in molecular simulations.

Authors:  Ryan S DeFever; Colin Targonski; Steven W Hall; Melissa C Smith; Sapna Sarupria
Journal:  Chem Sci       Date:  2019-07-11       Impact factor: 9.825

4.  Gaussian-Based Smooth Dielectric Function: A Surface-Free Approach for Modeling Macromolecular Binding in Solvents.

Authors:  Arghya Chakravorty; Zhe Jia; Yunhui Peng; Nayere Tajielyato; Lisi Wang; Emil Alexov
Journal:  Front Mol Biosci       Date:  2018-03-27

5.  Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction.

Authors:  Ellen M Adams; Simone Pezzotti; Jonas Ahlers; Maximilian Rüttermann; Maxim Levin; Adi Goldenzweig; Yoav Peleg; Sarel J Fleishman; Irit Sagi; Martina Havenith
Journal:  JACS Au       Date:  2021-06-18
  5 in total

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