| Literature DB >> 29249917 |
Ruifang Li-Gao1, Renée de Mutsert2, Patrick C N Rensen3,4, Jan Bert van Klinken4,5, Cornelia Prehn6, Jerzy Adamski6,7,8, Astrid van Hylckama Vlieg2, Martin den Heijer2, Saskia le Cessie2,9, Frits R Rosendaal2, Ko Willems van Dijk3,4,5, Dennis O Mook-Kanamori2,10.
Abstract
INTRODUCTION: Fasting metabolite profiles have been shown to distinguish type 2 diabetes (T2D) patients from normal glucose tolerance (NGT) individuals.Entities:
Keywords: Fasting; Impaired fasting glucose; LASSO regularised logistic regression; Metabolomics; Postprandial; Risk stratification; Type 2 diabetes
Year: 2017 PMID: 29249917 PMCID: PMC5727148 DOI: 10.1007/s11306-017-1307-7
Source DB: PubMed Journal: Metabolomics ISSN: 1573-3882 Impact factor: 4.290
Fig. 1Flowchart of participant selection from NEO study for the current metabolomics study
Baseline characteristics of the study population, stratified by fasting glucose levels
| NGT (n = 175) | IFG (n = 186) | T2D (n = 165) | p valuesa | |
|---|---|---|---|---|
| Demographic/anthropometric | ||||
| Age (years) | 55.1 (5.6) | 56.8 (5.8) | 56.4 (5.5) | < 0.05 |
| Sex (% men) | 84 (48.0) | 118 (63.4) | 90 (54.5) | < 0.05 |
| BMI (kg/m2) | 28.3 (4.8) | 30.6 (4.2) | 32.6 (5.2) | < 0.05 |
| Fasting blood concentrations | ||||
| Glucose (mmol/L) | 5.2 (0.5) | 6.4 (0.2) | 8.1 (1.8) | < 0.05 |
| Insulin (mU/L) | 11.3 (8.2) | 15.4 (8.3) | 22.0 (24.0) | < 0.05 |
| HbA1c (%) | 5.3 (0.2) | 5.5 (0.3) | 6.3 (1.1) | < 0.05 |
| HDL-cholesterol (mmol/L) | 1.5 (0.4) | 1.4 (0.4) | 1.2 (0.3) | < 0.05 |
| Total cholesterol (mmol/L) | 5.9 (1.1) | 6.0 (1.0) | 5.9 (1.1) | 0.8 |
| Triglycerides (mmol/L) | 1.2 (0.8) | 1.8 (1.3) | 1.9 (1.0) | < 0.05 |
| LDL-cholesterol (mmol/L) | 3.8 (1.0) | 3.8 (0.9) | 3.8 (1.0) | 0.9 |
| Insulin resistance (HOMA-IR) | 2.7 (2.0) | 4.4 (2.4) | 7.8 (8.6) | < 0.05 |
| Beta-cell function (HOMA-β) | 130.9 (90.1) | 106.7 (56.4) | 103.8 (111.1) | < 0.05 |
Values represent mean (standard deviation), or n (%)
Normal glucose tolerance (NGT): fasting glucose ≤ 6.0 mmol/L
Impaired fasting glycaemia (IFG): fasting glucose ≥ 6.1 and < 7.0 mmol/L
Type 2 diabetes (T2D): fasting glucose ≥ 7.0 mmol/L
aFor continuous variables, p values were derived from the one-way ANOVA test; for categorical variable, p values were derived from chi-squared test. For glucose, insulin, triglycerides, HOMA-IR and HOMA-β, the raw values were log-transformed before the test, in order to obtain a normal distribution
Fig. 2The metabolite profiles selected by LASSO regularised logistic regression and the Venn diagram of the most parsimonious metabolite profiles under fasting, postprandial and response. The numbers highlighted in red colour indicate the number of metabolites composed of the profile. Full metabolite names are shown in Supplementary Table S1
Results of the Wilcoxon rank-sum tests of metabolite concentration difference between the NGT and T2D groups
| Metabolite | Fasting | Postprandial | Response | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hit | %diff | p value | hit | %diff | p value | Hit | %diff | p value | |
| C0 | 7.46 | 1.85E−03 | 4.19 | 5.25E−02 | x | − 2.43 | 2.94E−02 | ||
| C10 | 6.54 | 7.17E−02 | 17.51 |
| x | 10.28 |
| ||
| C12 | × | 5.49 | 1.24E−01 | 11.10 |
| 4.54 | 1.06E−01 | ||
| C16:1 | × | 26.53 |
| × | 29.88 |
| 3.45 | 1.09E−02 | |
| C18 | 5.61 | 6.76E−02 | 2.59 | 3.77E−01 | × | − 3.39 | 6.66E−02 | ||
| C2 | 6.85 | 3.70E−02 | 12.50 |
| × | 5.71 | 2.94E−02 | ||
| C3:1 | − 4.32 | 6.82E−02 | 3.63 | 1.53E−01 | × | 6.86 | 2.76E−02 | ||
| C4:1 | × | 16.40 |
| × | 20.02 |
| 3.05 | 2.06E−01 | |
| C5 | 13.47 |
| 18.23 |
| × | 4.68 | 3.60E−02 | ||
| C5:1-DC | 4.52 | 5.82E−02 | 10.73 |
| × | 6.30 | 4.20E−02 | ||
| C5-DC/C6-OH | × | − 5.13 | 2.34E−02 | − 5.16 | 2.55E−02 | 1.61 | 5.66E−01 | ||
| C4:1-DC/C6 | 9.83 |
| 7.95 |
| × | − 2.66 | 2.35E−01 | ||
| C8 | × | 2.47 | 4.18E−01 | 4.91 | 8.57E−02 | 1.96 | 4.49E−01 | ||
| C9 | 1.58 | 6.54E−01 | 8.29 | 1.17E−02 | × | 6.49 | 4.06E−03 | ||
| Gly | × | − 13.37 |
| × | − 18.37 |
| − 4.80 |
| |
| Met | 2.87 | 8.55E−02 | − 6.77 |
| × | − 10.25 |
| ||
| Ser | − 6.51 |
| − 14.97 |
| × | − 9.72 |
| ||
| Trp | 3.86 |
| 3.91 |
| × | 0.20 | 8.53E−01 | ||
| Tyr | × | 14.94 |
| 9.29 |
| − 5.02 | 7.14E−03 | ||
| Val | − 1.69 | 3.62E−01 | − 6.51 |
| × | − 6.60 |
| ||
| xLeu | × | 16.68 |
| 9.04 |
| − 6.58 |
| ||
| lysoPC a C17:0 | × | − 21.06 |
| × | − 21.72 |
| − 0.64 | 6.71E−01 | |
| lysoPC a C18:0 | − 7.63 | 3.10E−03 | − 9.42 |
| × | − 2.03 | 1.04E−01 | ||
| lysoPC a C18:1 | × | − 14.66 |
| − 15.35 |
| − 2.09 | 1.97E−01 | ||
| PC aa C34:2 | 7.10 |
| 8.58 |
| × | 1.78 | 8.45E−02 | ||
| PC ae C30:1 | 6.81 | 1.21E−01 | 0.87 | 8.38E−01 | × | − 5.68 | 2.60E−01 | ||
| PC ae C44:4 | × | − 8.53 |
| − 8.60 |
| − 0.37 | 7.52E−01 | ||
| PC ae C44:5 | × | − 9.61 |
| − 11.05 |
| − 1.55 | 1.12E−01 | ||
The original untransformed metabolite concentrations are used to test the statistical significance between NGT and T2D for individual metabolite
The composition of each metabolite profile selected by LASSO model is specified by “×” in the hit column
%diff reflects the percentage of metabolite concentration difference between the NGT and T2D group. It is calculated by taking the median of metabolite concentration differences between the NGT and T2D group divided by the median metabolite concentration in NGT group. The ratio multiplies by 100 to percentage
p values are calculated by two-sided Wilcoxon rank-sum tests
ap values < 1.79 × 10−3 (= 0.05/28 for Bonferroni correction) for significant difference between NGT and T2D group, and highlighted in bold
Fig. 3The distributions of T2D probability prediction for the IFG group under fasting, postprandial and response and the probability correlations between different states. The Pearson correlations were labeled on the top of the figure
Fig. 4The distributions of clinically relevant metabolic traits across three subgroups (PN predicted normal, PM predicted middle, PD predicted T2D) in the IFG group predicted by LASSO model, along with the NGT and T2D group. Differences between PN, PM and PD were statistically depicted by one-way ANOVA with Tukey post hoc from PN as the reference group. *p value < 0.05