Literature DB >> 32162128

Miniature inverted-repeat transposable elements (MITEs), derived insertional polymorphism as a tool of marker systems for molecular plant breeding.

B Nandini1.   

Abstract

Plant molecular breeding is expected to give significant gains in cultivar development through development and utilization of suitable molecular marker systems for genetic diversity analysis, rapid DNA fingerprinting, identification of true hybrids, trait mapping and marker-assisted selection. Transposable elements (TEs) are the most abundant component in a genome and being used as genetic markers in the plant molecular breeding. Here, we review on the high copious transposable element belonging to class-II DNA TEs called "miniature inverted-repeat transposable elements" (MITEs). MITEs are ubiquitous, short and non-autonomous DNA transposable elements which have a tendency to insert into genes and genic regions have paved a way for the development of functional DNA marker systems in plant genomes. This review summarises the characteristics of MITEs, principles and methodologies for development of MITEs based DNA markers, bioinformatics tools and resources for plant MITE discovery and their utilization in crop improvement.

Keywords:  Insertional polymorphism; Miniature inverted-repeat transposable elements; Molecular markers; Polymerase chain reaction; Target site duplications; Terminal inverted repeats

Mesh:

Substances:

Year:  2020        PMID: 32162128     DOI: 10.1007/s11033-020-05365-y

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  91 in total

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Authors:  Weidong Bao; Kenji K Kojima; Oleksiy Kohany
Journal:  Mob DNA       Date:  2015-06-02

Review 2.  Computational tools to unmask transposable elements.

Authors:  Patricia Goerner-Potvin; Guillaume Bourque
Journal:  Nat Rev Genet       Date:  2018-11       Impact factor: 53.242

3.  Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

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Journal:  Nat Genet       Date:  2018-07-30       Impact factor: 38.330

4.  Pack-MULE transposable elements mediate gene evolution in plants.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Sean R Eddy; Susan R Wessler
Journal:  Nature       Date:  2004-09-30       Impact factor: 49.962

5.  Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa.

Authors:  Chen Lu; Jiongjiong Chen; Yu Zhang; Qun Hu; Wenqing Su; Hanhui Kuang
Journal:  Mol Biol Evol       Date:  2011-11-16       Impact factor: 16.240

Review 6.  Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives.

Authors:  M Govindaraj; M Vetriventhan; M Srinivasan
Journal:  Genet Res Int       Date:  2015-03-19

7.  T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data.

Authors:  Anna-Sophie Fiston-Lavier; Maite G Barrón; Dmitri A Petrov; Josefa González
Journal:  Nucleic Acids Res       Date:  2014-12-15       Impact factor: 16.971

8.  Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Morus notabilis).

Authors:  Youchao Xin; Bi Ma; Zhonghuai Xiang; Ningjia He
Journal:  Mob DNA       Date:  2019-06-25

9.  BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species.

Authors:  Jayakodi Murukarthick; Perumal Sampath; Sang Choon Lee; Beom-Soon Choi; Natesan Senthil; Shengyi Liu; Tae-Jin Yang
Journal:  BMC Res Notes       Date:  2014-06-20

10.  A novel method for identifying polymorphic transposable elements via scanning of high-throughput short reads.

Authors:  Houxiang Kang; Dan Zhu; Runmao Lin; Stephen Obol Opiyo; Ning Jiang; Shin-Han Shiu; Guo-Liang Wang
Journal:  DNA Res       Date:  2016-04-20       Impact factor: 4.458

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  4 in total

Review 1.  Epigenetic targeting of transposon relics: beating the dead horses of the genome?

Authors:  Iris Sammarco; Janto Pieters; Susnata Salony; Izabela Toman; Grygoriy Zolotarov; Clément Lafon Placette
Journal:  Epigenetics       Date:  2022-01-04       Impact factor: 4.861

Review 2.  Genomic and Meiotic Changes Accompanying Polyploidization.

Authors:  Francesco Blasio; Pilar Prieto; Mónica Pradillo; Tomás Naranjo
Journal:  Plants (Basel)       Date:  2022-01-03

3.  Identification and Characterization of PTE-2, a Stowaway-like MITE Activated in Transgenic Chinese Cabbage Lines.

Authors:  Young-Ji Jeon; Yun-Hee Shin; Su-Jeong Cheon; Young-Doo Park
Journal:  Genes (Basel)       Date:  2022-07-08       Impact factor: 4.141

4.  Comparative Study of Pine Reference Genomes Reveals Transposable Element Interconnected Gene Networks.

Authors:  Angelika Voronova; Martha Rendón-Anaya; Pär Ingvarsson; Ruslan Kalendar; Dainis Ruņģis
Journal:  Genes (Basel)       Date:  2020-10-16       Impact factor: 4.096

  4 in total

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