| Literature DB >> 29242638 |
Paolo Emilio Puddu1, Paolo Piras2, Daan Kromhout3, Hanna Tolonen4, Anthony Kafatos5, Alessandro Menotti6.
Abstract
We aimed at performing a calibration and re-calibration process using six standard risk factors from Northern (NE, N = 2360) or Southern European (SE, N = 2789) middle-aged men of the Seven Countries Study, whose parameters and data were fully known, to establish whether re-calibration gave the right answer. Greenwood-Nam-D'Agostino technique as modified by Demler (GNDD) in 2015 produced chi-squared statistics using 10 deciles of observed/expected CHD mortality risk, corresponding to Hosmer-Lemeshaw chi-squared employed for multiple logistic equations whereby binary data are used. Instead of the number of events, the GNDD test uses survival probabilities of observed and predicted events. The exercise applied, in five different ways, the parameters of the NE-predictive model to SE (and vice-versa) and compared the outcome of the simulated re-calibration with the real data. Good re-calibration could be obtained only when risk factor coefficients were substituted, being similar in magnitude and not significantly different between NE-SE. In all other ways, a good re-calibration could not be obtained. This is enough to praise for an overall need of re-evaluation of most investigations that, without GNDD or another proper technique for statistically assessing the potential differences, concluded that re-calibration is a fair method and might therefore be used, with no specific caution.Entities:
Mesh:
Year: 2017 PMID: 29242638 PMCID: PMC5730554 DOI: 10.1038/s41598-017-17784-2
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Mean levels of risk factors and CHD mortality in Northern and Southern Europe.
| NE | SE | P of difference (<) | |
|---|---|---|---|
| Mean and (SD) | Mean and (SD) | ||
| Age, years | 49.3 (5.54) | 49.14 (5.31) | 0.2619 |
| Body mass index, kg/m2 | 23.8 (3.05) |
| 0.0001 |
| Systolic blood pressure, mm Hg | 143.7 (20.08) | 140.3 (20.97) | 0.0001 |
| Heart rate, beats/min | 69.1 (13.07) | 68.4 (13.10) | 0.0632 |
| Serum cholesterol, mmol/L | 6.5 (1.32) | 5.25 (1.09 | 0.0001 |
| Never smokers, proportion (*) | 15.3 (0.74) | 25.0 (0.82) | 0.0001 |
| Ex-smokers, proportion (*) | 18.0 (0.79) | 14.3 (0.66) | 0.0001 |
| Smokers, proportion (*) | 66.7 (0.97) | 60.7 (0.93) | 0.0001 |
| CHD fatal CHD in 25 years, N | 465 | 165 | — |
| CHD fatal events, per 1000 in 25 years | 197 | 59 | 0.0001 |
NE = Northern Europe; SE = Southern Europe
SD = standard deviation
(*) for proportion = % and (standard error).
Cox proportional hazards models predicting 25-year CHD mortality as a function of 6 risk factors in Northern and Southern Europe.
| Delta for Hazard Ratios | NE | SE | P of difference between coefficients (*) | |
|---|---|---|---|---|
| Hazard Ratios and (95% CI) | Hazard Ratio and (95% CI) | |||
| Age, years | 5 | 1.36 (1.25–1.49) | 1.35 (1.15–1.57) | 0.8929 |
| Body mass index, kg/m2 | 3 | 1.01 (0.92–1.11) | 1.14 (1.00–1.29) | 0.1200 |
| Systolic blood pressure, mmHg | 20 | 1.39 (1.28–1.52) | 1.42 (1.22–1.65) | 0.8549 |
| Heart rate, beats/min | 13 | 1.02 (0.93–1.12) | 1.14 (0.99–1.32) | 0.2014 |
| Serum cholesterol, mmol/L | 1 | 1.23 (1.15–1.31) | 1.25 (1.10–1.43) | 0.8051 |
| Never smokers, proportion | reference | — | — | — |
| Ex-smokers, proportion | 1 | 1.15 (0.83–1.61) | 1.31 (0.75–2.26) | 0.7042 |
| Smokers, proportion | 1 | 1.52 (1.16–2.00) | 2.02 (1.35–3.02) | 0.2570 |
| S(0) = baseline cumulative survival | — | 0.7698 | 0.9354 |
NE = Northern Europe; SE = Southern Europe
CI = confidence intervals
Deltas for Hazard Ratios (HR) roughly correspond to 1 standard deviation of each risk factor.
(*) Coefficients not reported.
Estimated probabilities of CHD mortality risk in deciles of estimated risk from six different models in Northern and Southern Europe. (1 calibration, 5 re-calibration).
| Model | Details | Estimated risk probabilities | |
|---|---|---|---|
| NE | SE | ||
| Calibrated SELF | Mean observed | 0.2519 | 0.0801 |
| Mean expected | 0.2555 | 0.0829 | |
| Decile 1 | 0.0939 | 0.0198 | |
| Decile 10 | 0.5532 | 0.2452 | |
| Ratio decile10/decile1 | 5.89 | 12.39 | |
| p of chi squared of GNDD test | 0.7296 | 0.5942 | |
| Re-calibrated SCM | Mean expected | 0.1148 | 0.1908 |
| Decile 1 | 0.0311 | 0.0652 | |
| Decile 10 | 0.3107 | 0.4420 | |
| Ratio decile10/decile1 | 10.0 | 6.78 | |
| p of chi squared of GNDD test |
|
| |
| Re-calibrated CM | Mean expected | 0.3516 | 0.0547 |
| Decile 1 | 0.1161 | 0.0171 | |
| Decile 10 | 0.3516 | 0.1419 | |
| Ratio decile10/decile1 | 6.40 | 8.32 | |
| p of chi squared of GNDD test |
|
| |
| Re-calibrated C | Mean expected | 0.2624 | 0.0768 |
| Decile 1 | 0.0802 | 0.0243 | |
| Decile 10 | 0.6070 | 0.1957 | |
| Ratio decile10/decile1 | 7.60 | 8.06 | |
| p of chi squared of GNDD test | 0.2820 | 0.3776 | |
| Re-calibrated WC | Mean expected | 0.2763 | 0.0938 |
| Decile 1 | 0.0628 | 0.0150 | |
| Decile 10 | 0.7129 | 0.3295 | |
| Ratio decile10/decile1 | 11.34 | 21.94 | |
| p of chi squared of GNDD test |
|
| |
| Re-calibrated ALTS | Mean expected | 0.2141 | 0.0950 |
| Decile 1 | 0.0765 | 0.0229 | |
| Decile 10 | 0.4803 | 0.2774 | |
| Ratio decile10/decile1 | 4.32 | 12.09 | |
| p of chi squared of GNDD test |
|
| |
NE = Northern Europe; SE = Southern Europe;
SELF = original model, respectively NE or SE; SCM = substituting S(0), coefficients and means of risk factors; CM = model substituting coefficients and means of risk factors; C = model substituting coefficients only; WC = model substituting coefficients with the widest coefficients that had the corresponding HR (95% CI): age 1.50 (1.28 1.77); BMI 1.21 (1.05 1.41); systolic blood pressure 1.55 (1.32 1.82); heart rate 1.05 (0.81 1.36); cholesterol 1.28 (1.18 1.39); ex-smokers 1.31 (0.75 2.26); smoker 2.18 (1.45 3.28); finally ALTS = substituting S(0) with altered S(0): for NE 0.9098 instead of 0.7698; for SE: 0.9254 instead of 0.9354.
GNDD = Greenwood-Nam-D’Agostino-Demler goodness of fit test for re-calibrated survival models: by this test significant difference (outlined here in bold) means that re-calibration is not good enough[24].
Figure 1Kaplan-Meier observed versus expected CHD mortality probabilities in Northern (left: NE) versus Southern (right: SE) Europe in comparison to the identity lines and depending on whether calibration and re-calibration (by five different methods) curves were performed using models: a) with self data (SELF: either NE or SE), corresponding to proper calibration; or re-calibrating by substituting: b1) S(0), coefficients and means of risk factors (SCM); b2) coefficients and means of risk factors (CM); b3) coefficients only (C); b4) deliberately altered S(0) (ALTS); and b5) the widest coefficients (WC) derived from four population groups of the same study for the six risk factors.