Literature DB >> 29233477

Molecular Anatomy of the Developing Human Retina.

Akina Hoshino1, Rinki Ratnapriya2, Matthew J Brooks2, Vijender Chaitankar2, Matthew S Wilken1, Chi Zhang1, Margaret R Starostik2, Linn Gieser2, Anna La Torre3, Mario Nishio1, Olivia Bates1, Ashley Walton2, Olivia Bermingham-McDonogh1, Ian A Glass4, Rachel O L Wong1, Anand Swaroop5, Thomas A Reh6.   

Abstract

Clinical and genetic heterogeneity associated with retinal diseases makes stem-cell-based therapies an attractive strategy for personalized medicine. However, we have limited understanding of the timing of key events in the developing human retina, and in particular the factors critical for generating the unique architecture of the fovea and surrounding macula. Here we define three key epochs in the transcriptome dynamics of human retina from fetal day (D) 52 to 136. Coincident histological analyses confirmed the cellular basis of transcriptional changes and highlighted the dramatic acceleration of development in the fovea compared with peripheral retina. Human and mouse retinal transcriptomes show remarkable similarity in developmental stages, although morphogenesis was greatly expanded in humans. Integration of DNA accessibility data allowed us to reconstruct transcriptional networks controlling photoreceptor differentiation. Our studies provide insights into human retinal development and serve as a resource for molecular staging of human stem-cell-derived retinal organoids.
Copyright © 2017 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  development; fetal; fovea; gene network; human; macula; organoids; photoreceptor; retina; transcriptome

Mesh:

Substances:

Year:  2017        PMID: 29233477      PMCID: PMC5776731          DOI: 10.1016/j.devcel.2017.10.029

Source DB:  PubMed          Journal:  Dev Cell        ISSN: 1534-5807            Impact factor:   12.270


  78 in total

1.  Self-formation of optic cups and storable stratified neural retina from human ESCs.

Authors:  Tokushige Nakano; Satoshi Ando; Nozomu Takata; Masako Kawada; Keiko Muguruma; Kiyotoshi Sekiguchi; Koichi Saito; Shigenobu Yonemura; Mototsugu Eiraku; Yoshiki Sasai
Journal:  Cell Stem Cell       Date:  2012-06-14       Impact factor: 24.633

2.  Neurotrophin receptors expression in the developing mouse retina: an immunohistochemical study.

Authors:  M M Llamosas; R Cernuda-Cernuda; J J Huerta; J A Vega; J M García-Fernández
Journal:  Anat Embryol (Berl)       Date:  1997-04

3.  Cell differentiation in the retina of the mouse.

Authors:  R W Young
Journal:  Anat Rec       Date:  1985-06

4.  Expression of photoreceptor-specific nuclear receptor NR2E3 in rod photoreceptors of fetal human retina.

Authors:  Keely M Bumsted O'Brien; Hong Cheng; Yibin Jiang; Dorothea Schulte; Anand Swaroop; Anita E Hendrickson
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-08       Impact factor: 4.799

5.  Recoverin immunoreactivity in mammalian cone bipolar cells.

Authors:  A H Milam; D M Dacey; A M Dizhoor
Journal:  Vis Neurosci       Date:  1993 Jan-Feb       Impact factor: 3.241

6.  Conserved microRNA pathway regulates developmental timing of retinal neurogenesis.

Authors:  Anna La Torre; Sean Georgi; Thomas A Reh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-10       Impact factor: 11.205

7.  Novel retinal and cone photoreceptor transcripts revealed by human macular expression profiling.

Authors:  Daniel M Hornan; Stuart N Peirson; Alison J Hardcastle; Robert S Molday; Michael E Cheetham; Andrew R Webster
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-12       Impact factor: 4.799

8.  REEP6 mediates trafficking of a subset of Clathrin-coated vesicles and is critical for rod photoreceptor function and survival.

Authors:  Shobi Veleri; Jacob Nellissery; Bibhudatta Mishra; Souparnika H Manjunath; Matthew J Brooks; Lijin Dong; Kunio Nagashima; Haohua Qian; Chun Gao; Yuri V Sergeev; Xiu-Feng Huang; Jia Qu; Fan Lu; Artur V Cideciyan; Tiansen Li; Zi-Bing Jin; Robert N Fariss; Rinki Ratnapriya; Samuel G Jacobson; Anand Swaroop
Journal:  Hum Mol Genet       Date:  2017-06-15       Impact factor: 6.150

9.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

10.  Differential expression of anti-angiogenic factors and guidance genes in the developing macula.

Authors:  Peter Kozulin; Riccardo Natoli; Keely M Bumsted O'Brien; Michele C Madigan; Jan M Provis
Journal:  Mol Vis       Date:  2009-01-12       Impact factor: 2.367

View more
  76 in total

1.  Development of ON and OFF cholinergic amacrine cells in the human fetal retina.

Authors:  Chi Zhang; Wan-Qing Yu; Akina Hoshino; Jing Huang; Fred Rieke; Thomas A Reh; Rachel O L Wong
Journal:  J Comp Neurol       Date:  2018-02-25       Impact factor: 3.215

2.  Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.

Authors:  Sangbae Kim; Albert Lowe; Rachayata Dharmat; Seunghoon Lee; Leah A Owen; Jun Wang; Akbar Shakoor; Yumei Li; Denise J Morgan; Andre A Hejazi; Ales Cvekl; Margaret M DeAngelis; Z Jimmy Zhou; Rui Chen; Wei Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-09       Impact factor: 11.205

3.  Targeted deletion of an NRL- and CRX-regulated alternative promoter specifically silences FERM and PDZ domain containing 1 (Frmpd1) in rod photoreceptors.

Authors:  Christie K Campla; Hannah Mast; Lijin Dong; Jingqi Lei; Stephanie Halford; Sumathi Sekaran; Anand Swaroop
Journal:  Hum Mol Genet       Date:  2019-03-01       Impact factor: 6.150

4.  Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.

Authors:  Yi-Rong Peng; Karthik Shekhar; Wenjun Yan; Dustin Herrmann; Anna Sappington; Gregory S Bryman; Tavé van Zyl; Michael Tri H Do; Aviv Regev; Joshua R Sanes
Journal:  Cell       Date:  2019-01-31       Impact factor: 41.582

5.  Decomposing Cell Identity for Transfer Learning across Cellular Measurements, Platforms, Tissues, and Species.

Authors:  Genevieve L Stein-O'Brien; Brian S Clark; Thomas Sherman; Cristina Zibetti; Qiwen Hu; Rachel Sealfon; Sheng Liu; Jiang Qian; Carlo Colantuoni; Seth Blackshaw; Loyal A Goff; Elana J Fertig
Journal:  Cell Syst       Date:  2019-05-22       Impact factor: 10.304

6.  Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.

Authors:  Brian S Clark; Genevieve L Stein-O'Brien; Fion Shiau; Gabrielle H Cannon; Emily Davis-Marcisak; Thomas Sherman; Clayton P Santiago; Thanh V Hoang; Fatemeh Rajaii; Rebecca E James-Esposito; Richard M Gronostajski; Elana J Fertig; Loyal A Goff; Seth Blackshaw
Journal:  Neuron       Date:  2019-05-22       Impact factor: 17.173

Review 7.  Epigenetic control of gene regulation during development and disease: A view from the retina.

Authors:  Ximena Corso-Díaz; Catherine Jaeger; Vijender Chaitankar; Anand Swaroop
Journal:  Prog Retin Eye Res       Date:  2018-03-12       Impact factor: 21.198

8.  Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.

Authors:  Yufeng Lu; Fion Shiau; Wenyang Yi; Suying Lu; Qian Wu; Joel D Pearson; Alyssa Kallman; Suijuan Zhong; Thanh Hoang; Zhentao Zuo; Fangqi Zhao; Mei Zhang; Nicole Tsai; Yan Zhuo; Sheng He; Jun Zhang; Genevieve L Stein-O'Brien; Thomas D Sherman; Xin Duan; Elana J Fertig; Loyal A Goff; Donald J Zack; James T Handa; Tian Xue; Rod Bremner; Seth Blackshaw; Xiaoqun Wang; Brian S Clark
Journal:  Dev Cell       Date:  2020-05-07       Impact factor: 12.270

9.  Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.

Authors:  Cameron S Cowan; Magdalena Renner; Martina De Gennaro; Brigitte Gross-Scherf; David Goldblum; Yanyan Hou; Martin Munz; Tiago M Rodrigues; Jacek Krol; Tamas Szikra; Rachel Cuttat; Annick Waldt; Panagiotis Papasaikas; Roland Diggelmann; Claudia P Patino-Alvarez; Patricia Galliker; Stefan E Spirig; Dinko Pavlinic; Nadine Gerber-Hollbach; Sven Schuierer; Aldin Srdanovic; Marton Balogh; Riccardo Panero; Akos Kusnyerik; Arnold Szabo; Michael B Stadler; Selim Orgül; Simone Picelli; Pascal W Hasler; Andreas Hierlemann; Hendrik P N Scholl; Guglielmo Roma; Florian Nigsch; Botond Roska
Journal:  Cell       Date:  2020-09-17       Impact factor: 41.582

Review 10.  RNA Biology in Retinal Development and Disease.

Authors:  Lina Zelinger; Anand Swaroop
Journal:  Trends Genet       Date:  2018-01-31       Impact factor: 11.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.