Literature DB >> 29216458

A Commitment to Open Source in Neuroscience.

Padraig Gleeson1, Andrew P Davison2, R Angus Silver1, Giorgio A Ascoli3.   

Abstract

Modern neuroscience increasingly relies on custom-developed software, but much of this is not being made available to the wider community. A group of researchers are pledging to make code they produce for data analysis and modeling open source, and are actively encouraging their colleagues to follow suit.
Copyright © 2017 Elsevier Inc. All rights reserved.

Mesh：

Year:  2017        PMID： 29216458     DOI： 10.1016/j.neuron.2017.10.013

Source DB:  PubMed          Journal:  Neuron        ISSN： 0896-6273            Impact factor:   17.173


  19 in total

1.  Highlights from the Era of Open Source Web-Based Tools.

Authors:  Kristin R Anderson; Julie A Harris; Lydia Ng; Pjotr Prins; Sara Memar; Bengt Ljungquist; Daniel Fürth; Robert W Williams; Giorgio A Ascoli; Dani Dumitriu
Journal:  J Neurosci       Date:  2021-01-20       Impact factor: 6.167

2.  The importance of standards for sharing of computational models and data.

Authors:  Russell A Poldrack; Franklin Feingold; Michael J Frank; Padraig Gleeson; Gilles de Hollander; Quentin Jm Huys; Bradley C Love; Christopher J Markiewicz; Rosalyn Moran; Petra Ritter; Timothy T Rogers; Brandon M Turner; Tal Yarkoni; Ming Zhan; Jonathan D Cohen
Journal:  Comput Brain Behav       Date:  2019-10-07

3.  A practical guide for studying human behavior in the lab.

Authors:  Joao Barbosa; Heike Stein; Sam Zorowitz; Yael Niv; Christopher Summerfield; Salvador Soto-Faraco; Alexandre Hyafil
Journal:  Behav Res Methods       Date:  2022-03-09

4.  Low-Cost Platform for Multianimal Chronic Local Field Potential Video Monitoring with Graphical User Interface (GUI) for Seizure Detection and Behavioral Scoring.

Authors:  Gergely Tarcsay; Brittney Lee Boublil; Laura A Ewell
Journal:  eNeuro       Date:  2022-10-12

Review 5.  Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience.

Authors:  Lealem Mulugeta; Andrew Drach; Ahmet Erdemir; C A Hunt; Marc Horner; Joy P Ku; Jerry G Myers; Rajanikanth Vadigepalli; William W Lytton
Journal:  Front Neuroinform       Date:  2018-04-16       Impact factor: 4.081

Review 6.  The Case for Neuroscience Research in the Classroom.

Authors:  Gregory J Gage
Journal:  Neuron       Date:  2019-06-05       Impact factor: 17.173

7.  Efficient metadata mining of web-accessible neural morphologies.

Authors:  Masood A Akram; Bengt Ljungquist; Giorgio A Ascoli
Journal:  Prog Biophys Mol Biol       Date:  2021-05-19       Impact factor: 3.667

8.  Federated learning for predicting clinical outcomes in patients with COVID-19.

Authors:  Ittai Dayan; Holger R Roth; Aoxiao Zhong; Fiona J Gilbert; Mona G Flores; Quanzheng Li; Ahmed Harouni; Amilcare Gentili; Anas Z Abidin; Andrew Liu; Anthony Beardsworth Costa; Bradford J Wood; Chien-Sung Tsai; Chih-Hung Wang; Chun-Nan Hsu; C K Lee; Peiying Ruan; Daguang Xu; Dufan Wu; Eddie Huang; Felipe Campos Kitamura; Griffin Lacey; Gustavo César de Antônio Corradi; Gustavo Nino; Hao-Hsin Shin; Hirofumi Obinata; Hui Ren; Jason C Crane; Jesse Tetreault; Jiahui Guan; John W Garrett; Joshua D Kaggie; Jung Gil Park; Keith Dreyer; Krishna Juluru; Kristopher Kersten; Marcio Aloisio Bezerra Cavalcanti Rockenbach; Marius George Linguraru; Masoom A Haider; Meena AbdelMaseeh; Nicola Rieke; Pablo F Damasceno; Pedro Mario Cruz E Silva; Pochuan Wang; Sheng Xu; Shuichi Kawano; Sira Sriswasdi; Soo Young Park; Thomas M Grist; Varun Buch; Watsamon Jantarabenjakul; Weichung Wang; Won Young Tak; Xiang Li; Xihong Lin; Young Joon Kwon; Abood Quraini; Andrew Feng; Andrew N Priest; Baris Turkbey; Benjamin Glicksberg; Bernardo Bizzo; Byung Seok Kim; Carlos Tor-Díez; Chia-Cheng Lee; Chia-Jung Hsu; Chin Lin; Chiu-Ling Lai; Christopher P Hess; Colin Compas; Deepeksha Bhatia; Eric K Oermann; Evan Leibovitz; Hisashi Sasaki; Hitoshi Mori; Isaac Yang; Jae Ho Sohn; Krishna Nand Keshava Murthy; Li-Chen Fu; Matheus Ribeiro Furtado de Mendonça; Mike Fralick; Min Kyu Kang; Mohammad Adil; Natalie Gangai; Peerapon Vateekul; Pierre Elnajjar; Sarah Hickman; Sharmila Majumdar; Shelley L McLeod; Sheridan Reed; Stefan Gräf; Stephanie Harmon; Tatsuya Kodama; Thanyawee Puthanakit; Tony Mazzulli; Vitor Lima de Lavor; Yothin Rakvongthai; Yu Rim Lee; Yuhong Wen
Journal:  Nat Med       Date:  2021-09-15       Impact factor: 87.241

9.  Methodological considerations for studying neural oscillations.

Authors:  Thomas Donoghue; Natalie Schaworonkow; Bradley Voytek
Journal:  Eur J Neurosci       Date:  2021-07-16       Impact factor: 3.698

10.  NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data.

Authors:  Jason S Rothman; R Angus Silver
Journal:  Front Neuroinform       Date:  2018-04-04       Impact factor: 4.081
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.