Literature DB >> 34526699

Federated learning for predicting clinical outcomes in patients with COVID-19.

Ittai Dayan1, Holger R Roth2, Aoxiao Zhong3,4, Fiona J Gilbert5, Mona G Flores6, Quanzheng Li3, Ahmed Harouni2, Amilcare Gentili7, Anas Z Abidin2, Andrew Liu2, Anthony Beardsworth Costa8, Bradford J Wood9,10, Chien-Sung Tsai11, Chih-Hung Wang12,13, Chun-Nan Hsu14, C K Lee2, Peiying Ruan2, Daguang Xu2, Dufan Wu3, Eddie Huang2, Felipe Campos Kitamura15, Griffin Lacey2, Gustavo César de Antônio Corradi15, Gustavo Nino16, Hao-Hsin Shin17, Hirofumi Obinata18, Hui Ren3, Jason C Crane19, Jesse Tetreault2, Jiahui Guan2, John W Garrett20, Joshua D Kaggie5, Jung Gil Park21, Keith Dreyer1,22, Krishna Juluru17, Kristopher Kersten2, Marcio Aloisio Bezerra Cavalcanti Rockenbach22, Marius George Linguraru23,24, Masoom A Haider25,26, Meena AbdelMaseeh26, Nicola Rieke2, Pablo F Damasceno19, Pedro Mario Cruz E Silva2, Pochuan Wang27,28, Sheng Xu9,10, Shuichi Kawano18, Sira Sriswasdi29,30, Soo Young Park31, Thomas M Grist32, Varun Buch22, Watsamon Jantarabenjakul33,34, Weichung Wang27,28, Won Young Tak31, Xiang Li3, Xihong Lin35, Young Joon Kwon8, Abood Quraini2, Andrew Feng2, Andrew N Priest36, Baris Turkbey10,37, Benjamin Glicksberg38, Bernardo Bizzo22, Byung Seok Kim39, Carlos Tor-Díez23, Chia-Cheng Lee40, Chia-Jung Hsu40, Chin Lin41,42,43, Chiu-Ling Lai44, Christopher P Hess19, Colin Compas2, Deepeksha Bhatia2, Eric K Oermann45, Evan Leibovitz22, Hisashi Sasaki18, Hitoshi Mori18, Isaac Yang2, Jae Ho Sohn19, Krishna Nand Keshava Murthy17, Li-Chen Fu46, Matheus Ribeiro Furtado de Mendonça15, Mike Fralick47, Min Kyu Kang21, Mohammad Adil2, Natalie Gangai17, Peerapon Vateekul48, Pierre Elnajjar17, Sarah Hickman5, Sharmila Majumdar19, Shelley L McLeod49,50, Sheridan Reed9,10, Stefan Gräf51, Stephanie Harmon10,52, Tatsuya Kodama18, Thanyawee Puthanakit33,34, Tony Mazzulli53,54,55, Vitor Lima de Lavor15, Yothin Rakvongthai56, Yu Rim Lee31, Yuhong Wen2.   

Abstract

Federated learning (FL) is a method used for training artificial intelligence models with data from multiple sources while maintaining data anonymity, thus removing many barriers to data sharing. Here we used data from 20 institutes across the globe to train a FL model, called EXAM (electronic medical record (EMR) chest X-ray AI model), that predicts the future oxygen requirements of symptomatic patients with COVID-19 using inputs of vital signs, laboratory data and chest X-rays. EXAM achieved an average area under the curve (AUC) >0.92 for predicting outcomes at 24 and 72 h from the time of initial presentation to the emergency room, and it provided 16% improvement in average AUC measured across all participating sites and an average increase in generalizability of 38% when compared with models trained at a single site using that site's data. For prediction of mechanical ventilation treatment or death at 24 h at the largest independent test site, EXAM achieved a sensitivity of 0.950 and specificity of 0.882. In this study, FL facilitated rapid data science collaboration without data exchange and generated a model that generalized across heterogeneous, unharmonized datasets for prediction of clinical outcomes in patients with COVID-19, setting the stage for the broader use of FL in healthcare.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Mesh:

Year:  2021        PMID: 34526699      PMCID: PMC9157510          DOI: 10.1038/s41591-021-01506-3

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   87.241


  43 in total

1.  Harmonization of detailed clinical models with clinical study data standards.

Authors:  G Jiang; J Evans; T A Oniki; J F Coyle; L Bain; S M Huff; R D Kush; C G Chute
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2.  Management of COVID-19 Respiratory Distress.

Authors:  John J Marini; Luciano Gattinoni
Journal:  JAMA       Date:  2020-06-09       Impact factor: 56.272

3.  A clinical risk score to identify patients with COVID-19 at high risk of critical care admission or death: An observational cohort study.

Authors:  James B Galloway; Sam Norton; Richard D Barker; Andrew Brookes; Ivana Carey; Benjamin D Clarke; Raeesa Jina; Carole Reid; Mark D Russell; Ruth Sneep; Leah Sugarman; Sarah Williams; Mark Yates; James Teo; Ajay M Shah; Fleur Cantle
Journal:  J Infect       Date:  2020-05-29       Impact factor: 6.072

4.  Federated learning in medicine: facilitating multi-institutional collaborations without sharing patient data.

Authors:  Micah J Sheller; Brandon Edwards; G Anthony Reina; Jason Martin; Sarthak Pati; Aikaterini Kotrotsou; Mikhail Milchenko; Weilin Xu; Daniel Marcus; Rivka R Colen; Spyridon Bakas
Journal:  Sci Rep       Date:  2020-07-28       Impact factor: 4.379

5.  Deep transfer learning for reducing health care disparities arising from biomedical data inequality.

Authors:  Yan Gao; Yan Cui
Journal:  Nat Commun       Date:  2020-10-12       Impact factor: 14.919

6.  Deep metric learning-based image retrieval system for chest radiograph and its clinical applications in COVID-19.

Authors:  Aoxiao Zhong; Xiang Li; Dufan Wu; Hui Ren; Kyungsang Kim; Younggon Kim; Varun Buch; Nir Neumark; Bernardo Bizzo; Won Young Tak; Soo Young Park; Yu Rim Lee; Min Kyu Kang; Jung Gil Park; Byung Seok Kim; Woo Jin Chung; Ning Guo; Ittai Dayan; Mannudeep K Kalra; Quanzheng Li
Journal:  Med Image Anal       Date:  2021-02-07       Impact factor: 8.545

7.  Pediatric lung imaging features of COVID-19: A systematic review and meta-analysis.

Authors:  Gustavo Nino; Jonathan Zember; Ramon Sanchez-Jacob; Maria J Gutierrez; Karun Sharma; Marius George Linguraru
Journal:  Pediatr Pulmonol       Date:  2020-11-02

8.  Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning.

Authors:  Shervin Minaee; Rahele Kafieh; Milan Sonka; Shakib Yazdani; Ghazaleh Jamalipour Soufi
Journal:  Med Image Anal       Date:  2020-07-21       Impact factor: 8.545

Review 9.  The future of digital health with federated learning.

Authors:  Nicola Rieke; Jonny Hancox; Wenqi Li; Fausto Milletarì; Holger R Roth; Shadi Albarqouni; Spyridon Bakas; Mathieu N Galtier; Bennett A Landman; Klaus Maier-Hein; Sébastien Ourselin; Micah Sheller; Ronald M Summers; Andrew Trask; Daguang Xu; Maximilian Baust; M Jorge Cardoso
Journal:  NPJ Digit Med       Date:  2020-09-14
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  22 in total

Review 1.  Multimodal biomedical AI.

Authors:  Julián N Acosta; Guido J Falcone; Pranav Rajpurkar; Eric J Topol
Journal:  Nat Med       Date:  2022-09-15       Impact factor: 87.241

2.  Widen the Applicability of a Convolutional Neural-Network-Assisted Glaucoma Detection Algorithm of Limited Training Images across Different Datasets.

Authors:  Yu-Chieh Ko; Wei-Shiang Chen; Hung-Hsun Chen; Tsui-Kang Hsu; Ying-Chi Chen; Catherine Jui-Ling Liu; Henry Horng-Shing Lu
Journal:  Biomedicines       Date:  2022-06-03

Review 3.  12 Plagues of AI in Healthcare: A Practical Guide to Current Issues With Using Machine Learning in a Medical Context.

Authors:  Stephane Doyen; Nicholas B Dadario
Journal:  Front Digit Health       Date:  2022-05-03

4.  Robust Aggregation for Federated Learning by Minimum γ-Divergence Estimation.

Authors:  Cen-Jhih Li; Pin-Han Huang; Yi-Ting Ma; Hung Hung; Su-Yun Huang
Journal:  Entropy (Basel)       Date:  2022-05-13       Impact factor: 2.738

5.  A novel decentralized federated learning approach to train on globally distributed, poor quality, and protected private medical data.

Authors:  T V Nguyen; M A Dakka; S M Diakiw; M D VerMilyea; M Perugini; J M M Hall; D Perugini
Journal:  Sci Rep       Date:  2022-05-25       Impact factor: 4.996

Review 6.  Machine Learning in Prostate MRI for Prostate Cancer: Current Status and Future Opportunities.

Authors:  Huanye Li; Chau Hung Lee; David Chia; Zhiping Lin; Weimin Huang; Cher Heng Tan
Journal:  Diagnostics (Basel)       Date:  2022-01-24

7.  Developing artificial intelligence technology for pediatric pulmonology: Lessons from COVID-19.

Authors:  Gustavo Nino; Marius G Linguraru
Journal:  Pediatr Pulmonol       Date:  2022-05-03

8.  Biosecurity in an age of open science.

Authors:  James Andrew Smith; Jonas B Sandbrink
Journal:  PLoS Biol       Date:  2022-04-14       Impact factor: 9.593

9.  Diagnostic Performance of a Deep Learning Model Deployed at a National COVID-19 Screening Facility for Detection of Pneumonia on Frontal Chest Radiographs.

Authors:  Jordan Z T Sim; Yong-Han Ting; Yuan Tang; Yangqin Feng; Xiaofeng Lei; Xiaohong Wang; Wen-Xiang Chen; Su Huang; Sum-Thai Wong; Zhongkang Lu; Yingnan Cui; Soo-Kng Teo; Xin-Xing Xu; Wei-Min Huang; Cher-Heng Tan
Journal:  Healthcare (Basel)       Date:  2022-01-17

Review 10.  Artificial Intelligence in Critical Care Medicine.

Authors:  Joo Heung Yoon; Michael R Pinsky; Gilles Clermont
Journal:  Crit Care       Date:  2022-03-22       Impact factor: 19.334

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