| Literature DB >> 29212537 |
Un Chul Park1,2, Joo Young Shin1,2, Hum Chung1,3, Hyeong Gon Yu4,5.
Abstract
BACKGROUND: To investigate whether genetic risk variants for age-related macular degeneration (AMD) are associated with response to intravitreal anti-vascular endothelial growth factor (VEGF) in polypoidal choroidal vasculopathy (PCV) patients.Entities:
Keywords: Anti-vascular endothelial growth factor; Pharmacogenetics; Polypoidal choroidal vasculopathy; Single nucleotide polymorphism
Mesh:
Substances:
Year: 2017 PMID: 29212537 PMCID: PMC5719580 DOI: 10.1186/s12886-017-0631-z
Source DB: PubMed Journal: BMC Ophthalmol ISSN: 1471-2415 Impact factor: 2.209
Characteristics of candidate genetic markers
| Chr | Gene | Location | dbSNP ID | Major/Minor Allele | MAF | Genotyping Method | HWE | Genotyping rate |
|---|---|---|---|---|---|---|---|---|
| 1 |
| I62V | rs800292 | G/A | 0.290 | SNaPshot | 0.083 | 100% |
| 1 |
| Y402H | rs1061170 | T/C | 0.080 | SNaPshot | 0.407 | 100% |
| 6 |
| E318D | rs9332739 | G/C | 0.019 | Taqman | 0.019 | 100% |
| 6 |
| R32Q | rs641153 | G/A | 0.081 | SNaPshot | 1 | 98.8% |
| 6 |
| 3493G/A | rs429608 | G/A | 0.088 | Taqman | 0.463 | 98.8% |
| 6 |
| C-2578A | rs699947 | C/A | 0.281 | SNaPshot | 0.782 | 98.8% |
| 6 |
| C936T | rs3025039 | C/T | 0.247 | Taqman | 1 | 100% |
| 10 |
| A69S | rs10490924 | T/G | 0.375 | Taqman | 0.811 | 98.8% |
| 10 |
| -625A/G | rs11200638 | A/G | 0.370 | Taqman | 0.641 | 100% |
| 17 |
| Met72Thr | rs1136287 | T/C | 0.488 | Taqman | 0.66 | 100% |
SNP Single nucleotide polymorphism (dbSNP ID; available at: http://www.ncbi.nlm.nih.gov/SNP/), MAF Minor allele frequency, HWE Hardy-Weinberg Equilibrium
Baseline clinical features and treatment outcomes of the patients
| Total | |
|---|---|
| Number of patients | 81 |
| Mean Age, years (range) | 67.6 ± 8.2 (50–83) |
| Male / Female | 49 (60.5%) / 32 (39.5%) |
| Smoking status | |
| Ever (current / ex-smoker) | 32 (39.5%) |
| Never | 49 (60.5%) |
| Baseline | |
| Best-corrected visual acuity, ETDRS letters | 50.6 ± 20.7 |
| Total foveal thickness, μm | 425.6 ± 199.4 |
| Vascular lesion area, mm2 | 3.5 ± 2.1 |
| Treatment outcomes at month 12 | |
| Best-corrected visual acuity, ETDRS letters | 55.6 ± 25.0 |
| Visual gain ≥15 letters | 25 (30.9%) |
| Total foveal thickness, μm | 344.4 ± 277.2 |
| Dry status on OCT | 34 (42.0%) |
| PED regression on OCT | 32 (39.5%) |
| Polyp regression on ICGA | 19 / 55 (34.5%) |
| Number of injections | 5.7 ± 1.9 |
ETDRS Early Treatment Diabetic Retinopathy Study
Association of non-genetic covariates with continuous outcome measures
| BCVA change from baseline | TFT change from baseline | |||
|---|---|---|---|---|
| β (95% CI) |
| β (95% CI) |
| |
| Age | −0.094 (−0.626 to 0.438) | 0.725 | 3.32 (−3.66 to 10.3) | 0.346 |
| Sex | 6.75 (−4.94 to 50.4) | 0.253 | −39.8 (−193.1 to 113.5) | 0.607 |
| Smoking | 5.97 (−5.67 to 17.6) | 0.310 | −89.1 (−241.7 to 63.6) | 0.249 |
| Baseline BCVA | −0.039 (−0.25 to 0.172) | 0.714 | 0.237 (−2.53 to 3.00) | 0.865 |
| Baseline TFT | −0.002 (−0.023 to 0.020) | 0.885 | −0.040 (−0.326 to 0.245) | 0.780 |
| Baseline vascular lesion area | −0.368 (−1.09 to 0.348) | 0.309 | 3.99 (−5.40 to 13.4) | 0.400 |
Regression coefficients (β) and P values for association of non-genetic covariates with mean change of best-corrected visual acuity and total foveal thickness from baseline are shown
CI Confidence interval
Fig. 1Regression of pigment epithelial detachment according to the ARMS2 rs10490924 genotypes. The G allele at ARMS2 rs10490924 had an additive effect on the chance of pigment epithelial detachment regression on optical coherence tomography. Uncorrected P values obtained by ordinary logistic regression are shown
Baseline characteristics and treatment outcome measures according to ARMS2 rs10490924 genotypes
| Genotype | OR (95% CI)* |
| ||||
|---|---|---|---|---|---|---|
| TT (34) | TG (35) | GG (11) | ||||
| Baseline characteristics | Age | 67.0 ± 8.7 | 68.4 ± 8.1 | 66.7 ± 7.2 | – | 0.556** |
| Sex (male/female) | 20 (58.8%)/14 | 20 (57.1%) / 15 | 8 (72.7%) / 3 | – | 0.508† | |
| Smoking (ever/never) | 12 (35.3%)/20 | 15 (42.9%) / 20 | 5 (45.5%) / 6 | – | 0.933† | |
| Baseline BCVA, letter | 53.1 ± 22.0 | 45.6 ± 20.8 | 56.8 ± 12.6 | – | 0.076** | |
| Baseline TFT, μm | 427.1 ± 222.1 | 452.6 ± 195.6 | 325.8 ± 102.8 | – | 0.188** | |
| Baseline PED height | 307.3 ± 127.4 | 299.1 ± 142.2 | 241.0 ± 132.1 | 0.203** | ||
| Baseline vascular lesion area, mm2 | 6.9 ± 5.4 | 5.5 ± 4.3 | 3.2 ± 2.9 | – | 0.067** | |
| Treatment outcome measures (at month 12) | BCVA change from baseline, letter | +0.9 ± 17.7 | +9.1 ± 19.5 | +5.4 ± 14.3 | – | 0.338†† |
| TFT change from baseline, μm | −36.8 ± 270.7 | −113.3 ± 226.7 | −110.1 ± 100.0 | – | 0.212†† | |
| ≥ 15 letter gain | 8 (23.5%) | 13 (37.1%) | 4 (36.4%) | 1.58 (0.78–3.23) | 0.208†† | |
| Dry status on OCT | 14 (41.2%) | 15 (42.9%) | 5 (45.5%) | 1.19 (0.56–2.53) | 0.622†† | |
| PED regression on OCT | 9 (26.4%) | 16 (45.7%) | 7 (63.6%) | 2.96 (1.38–6.36) | 0.004†† | |
| Polyp regression on ICGA | 8 (32.0%)/25 | 8 (34.8%)/23 | 3 (42.9%)/7 | 1.27 (0.85–1.90) | 0.215†† | |
| Number of injection | 5.7 ± 2.1 | 5.6 ± 1.7 | 5.7 ± 1.8 | – | 0.786†† | |
OR Odds ratio, CI Confidence interval, BCVA Best-corrected visual acuity, TFT Total foveal thickness, PED Pigment epithelial detachment, OCT Optical coherence tomography, ICGA Indocyanine green angiography
*odds ratio for G allele under additive genetic model
**Kruskal-Wallis test
†Chi-square test
††P - value from logistic regression model (categorical outcomes) or linear regression model (continuous outcomes), uncorrected for multiple testing
Genotypic distribution of patients who underwent photodynamic therapy
| Gene | Variant | Major allele (M) | Minor allele (m) | Proportion of PDT | OR (95% CI)* |
| ||
|---|---|---|---|---|---|---|---|---|
| MM | Mm | mm | ||||||
|
| rs800292 | G | A | 9 (20.0%)/45 | 3 (6.5%)/46 | 2 (50.0%)/4 | 0.72 (0.24–2.17) | 0.555 |
|
| rs1061170 | T | C | 12 (14.8%)/81 | 2 (15.4%)/13 | 0 (0.0%)/1 | 0.56 (0.10–3.02) | 0.498 |
|
| rs9332739 | G | C | 14 (15.1%)/93 | 0 (0.0%)/1 | 0 (0.0%)/1 | < 0.001 (NA) | 0.999 |
|
| rs641153 | G | A | 12 (15.2%)/79 | 1 (7.1%)/14 | 0 / 0 | 0.31 (0.03–3.00) | 0.312 |
|
| rs429608 | G | A | 13 (16.3%)/80 | 1 (7.7%)/13 | 0 (0.0%)/1 | 0.30 (0.03–2.69) | 0.283 |
|
| rs699947 | C | A | 3 (6.7%)/45 | 8 (20.5%)/39 | 3 (30.0%)/10 | 3.02 (1.19–7.68) | 0.020 |
|
| rs3025039 | C | T | 7 (13.2%)/53 | 6 (16.7%)/36 | 1 (16.7%)/6 | 1.22 (0.46–3.24) | 0.697 |
|
| rs10490924 | T | G | 8 (19.0%)/42 | 5 (12.5%)/40 | 1 (8.3%)/12 | 0.40 (0.14–1.15) | 0.090 |
|
| rs11200638 | A | G | 7 (16.7%)/42 | 6 (14.6%)/41 | 1 (8.3%)/12 | 0.48 (0.17–1.33) | 0.155 |
|
| rs1136287 | T | C | 3 (13.0%)/23 | 7 (14.0%)/50 | 4 (18.2%)/22 | 1.39 (0.55–3.48) | 0.484 |
Among 95 patients who completed 12-month follow-up, 14 underwent photodynamic therapy and their distributions according to the genotypes of candidate polymorphisms are shown
PDT Photodynamic therapy, MM Major allele homozygote, Mm Heterozygote, mm Minor allele homozygote, OR Odds ratio, CI Confidence interval, NA Not applicable
*Odds ratio for minor allele under additive genetic model
**P - value from logistic regression model, uncorrected for multiple testing