Literature DB >> 29209081

Low number of fixed somatic mutations in a long-lived oak tree.

Emanuel Schmid-Siegert1, Namrata Sarkar2,3,4, Christian Iseli1, Sandra Calderon1, Caroline Gouhier-Darimont5, Jacqueline Chrast2, Pietro Cattaneo5, Frédéric Schütz2, Laurent Farinelli6, Marco Pagni1, Michel Schneider7, Jérémie Voumard8, Michel Jaboyedoff8, Christian Fankhauser2, Christian S Hardtke5, Laurent Keller3, John R Pannell3, Alexandre Reymond2, Marc Robinson-Rechavi3,4, Ioannis Xenarios1,2,7, Philippe Reymond9.   

Abstract

Because plants do not possess a defined germline, deleterious somatic mutations can be passed to gametes, and a large number of cell divisions separating zygote from gamete formation may lead to many mutations in long-lived plants. We sequenced the genome of two terminal branches of a 234-year-old oak tree and found several fixed somatic single-nucleotide variants whose sequential appearance in the tree could be traced along nested sectors of younger branches. Our data suggest that stem cells of shoot meristems in trees are robustly protected from the accumulation of mutations.

Mesh:

Year:  2017        PMID: 29209081     DOI: 10.1038/s41477-017-0066-9

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  34 in total

Review 1.  Oak symbolism in the light of genomics.

Authors:  Thibault Leroy; Christophe Plomion; Antoine Kremer
Journal:  New Phytol       Date:  2019-07-25       Impact factor: 10.151

2.  Plant Genome Editing and the Relevance of Off-Target Changes.

Authors:  Nathaniel Graham; Gunvant B Patil; David M Bubeck; Raymond C Dobert; Kevin C Glenn; Annie T Gutsche; Sandeep Kumar; John A Lindbo; Luis Maas; Gregory D May; Miguel E Vega-Sanchez; Robert M Stupar; Peter L Morrell
Journal:  Plant Physiol       Date:  2020-05-26       Impact factor: 8.340

3.  Somatic genetic drift and multilevel selection in a clonal seagrass.

Authors:  Lei Yu; Christoffer Boström; Sören Franzenburg; Till Bayer; Tal Dagan; Thorsten B H Reusch
Journal:  Nat Ecol Evol       Date:  2020-05-11       Impact factor: 15.460

4.  Cell division in the shoot apical meristem is a trigger for miR156 decline and vegetative phase transition in Arabidopsis.

Authors:  Ying-Juan Cheng; Guan-Dong Shang; Zhou-Geng Xu; Sha Yu; Lian-Yu Wu; Dong Zhai; Shi-Long Tian; Jian Gao; Long Wang; Jia-Wei Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-16       Impact factor: 11.205

5.  Reproductive Longevity Predicts Mutation Rates in Primates.

Authors:  Gregg W C Thomas; Richard J Wang; Arthi Puri; R Alan Harris; Muthuswamy Raveendran; Daniel S T Hughes; Shwetha C Murali; Lawrence E Williams; Harsha Doddapaneni; Donna M Muzny; Richard A Gibbs; Christian R Abee; Mary R Galinski; Kim C Worley; Jeffrey Rogers; Predrag Radivojac; Matthew W Hahn
Journal:  Curr Biol       Date:  2018-09-27       Impact factor: 10.834

6.  Emerging Frontiers in the Study of Molecular Evolution.

Authors:  David A Liberles; Belinda Chang; Kerry Geiler-Samerotte; Aaron Goldman; Jody Hey; Betül Kaçar; Michelle Meyer; William Murphy; David Posada; Andrew Storfer
Journal:  J Mol Evol       Date:  2020-04       Impact factor: 2.395

7.  Somatic variations led to the selection of acidic and acidless orange cultivars.

Authors:  Lun Wang; Yue Huang; ZiAng Liu; Jiaxian He; Xiaolin Jiang; Fa He; Zhihao Lu; Shuizhi Yang; Peng Chen; Huiwen Yu; Bin Zeng; Lingjun Ke; Zongzhou Xie; Robert M Larkin; Dong Jiang; Ray Ming; Edward S Buckler; Xiuxin Deng; Qiang Xu
Journal:  Nat Plants       Date:  2021-06-17       Impact factor: 15.793

8.  Genome-wide DNA mutations in Arabidopsis plants after multigenerational exposure to high temperatures.

Authors:  Zhaogeng Lu; Jiawen Cui; Li Wang; Nianjun Teng; Shoudong Zhang; Hon-Ming Lam; Yingfang Zhu; Siwei Xiao; Wensi Ke; Jinxing Lin; Chenwu Xu; Biao Jin
Journal:  Genome Biol       Date:  2021-05-25       Impact factor: 13.583

Review 9.  Stability across the Whole Nuclear Genome in the Presence and Absence of DNA Mismatch Repair.

Authors:  Scott Alexander Lujan; Thomas A Kunkel
Journal:  Cells       Date:  2021-05-17       Impact factor: 6.600

10.  Meiosis and beyond - understanding the mechanistic and evolutionary processes shaping the germline genome.

Authors:  Roberta Bergero; Peter Ellis; Wilfried Haerty; Lee Larcombe; Iain Macaulay; Tarang Mehta; Mette Mogensen; David Murray; Will Nash; Matthew J Neale; Rebecca O'Connor; Christian Ottolini; Ned Peel; Luke Ramsey; Ben Skinner; Alexander Suh; Michael Summers; Yu Sun; Alison Tidy; Raheleh Rahbari; Claudia Rathje; Simone Immler
Journal:  Biol Rev Camb Philos Soc       Date:  2021-01-01
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